RNA id: TU518177


Basic Information

Item Value
RNA id TU518177
length 2564
RNA type TUCP
GC content 0.50
exon number 4
gene id G457491
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 92881393 ~ 92931639 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTGAAGAAAAATAGGAGTCTATTGATGCATTAGtgatgtttattttatttgtttgttttatttgtttgaGGCTAAGAACAACACCCACCTCAAAAACGATCTTCCGTCAGGGCAAAGATAGAGTATTAGAAACATACAAAACAATGCTGTCAATCCCTTTCTTTCTGAGGAACACAGTCAGGTCTCAAACATAAtgcttacagacagacagagagagagagaggcaaagagaggcagacagaccgagaaagagagagaggcagacagacagagaaagagagagaggcagacagacagacagacagacagacagagagagagagagagaaataggcagaaagacagagaggcagacaggtgaATGTGAAAATGGTTTAGAGGTAGCTAAATATCTGACATGCAGAAACCTGTCCCTGTGAATTCCAAAGAACAACATCATAACTAGCTTTGTGCTCTTGTTTGTTCTTCTTGCCAGTGTCAGTGGGTCATTAGTAGGTATTGAGAATAATCAGTTCTGTGTTTCAGCTCCATGGAGACAAGGGACTAGTTACGCAGCTGCTTTGAAGAGGGGGTCCTCAGCAAAGAGCTCCTTCACAAAGTTGTCCTCATCCTTGACCTCAGCAGGGCACTGAGCAGACACAGTGGTGGGGAAGGGCAGGATGGTGGGCTGGCTCATCCCAGGGATCTTTGGGTCTTGGACCATGGGCAGAATGGCGCCCTTCTCACCCACAGGCTGTTCGGGGAAGGAGGGCAGGGTCATGGGCAGGCCCAGGGCGGGGAGGACGGTCACGGTTCCCTGGGGAGGGTGGCGGGACTCGGTCCCGTGCGGGTGCtcgtggtgatggtggtggtgctcGTGCTCGTGCAGGTGAGCGTGCTTGTGGTCGTGATCCAAGGATAGCTCATGGTCATGCTCGTGAGTGTGGCCCTCGCCGTCGTGCTTGTAGTTGTGATGCTGGTGCGGTCCGGTGTCAGTGCTGTGGTTATGGGCCTTGGCGTGGTGGGCGTGAGCGTGGTCGTGACCGTGACCGTGGTCATGAGAGTGGTCGTGACCGCCAGCAGCTCCATCACCATGAGAGTGACCATGGGCACCATCTTTATGATCATGGGCGTGGGCGCCGTCGTGTTTGTGGTCTTTGGTGTGGTCGTGAGCGTGGTCGTGAGCGTGGTCGTGAGCGCCGGAGGCATTATGGGTGTGGTCTTTGCCGTGTTTTCCAGACTGAAGGGTGTGGCTgtggtctgtctctcctcccaacAGGTGAGCTGCCTTCTCCTTCTTTGAGTTCTGCTCTCAAAGACCTCACAGTTGACCGTGACAAACTCCTGGCCTCCCATGTCGTGAGAGTGGGAGCCCTTGCAGTGTCCTTTGTTGCAAACTCGCAGGCCATCAGAGGACACTTGGAGGCTGCGGAAGGGTCGGTGGTGTTGGCACAAGTCGTCTCCTGGATGGTGAACTCGGCAAAGTAGAAGGTTGCCATGCCCATCTGGAATACCAAGCAACAGAGGTCAGTGAGTAACGACAACAAGATAATTACACCCCAATATGAAACCAGTTCATTTGCTGCTGTGAGGTGGATTCATCGTTTTCTTGAATTGTTATGTTATGTTGTGGTGTTGATTTTGTATTTTGCTATAGTGgaatgtgttgtgtagtgttgtgttctgACCGATGTCCGTGCACGGGTGATGTTGAGGACGGCGAAGTGATTGGCCAAGCCGCTGTCCTTGTTGAACTTCTCCATGGACAGCGTGGCCGTCTTCAGGATCTCCGGGTGGTCCTTGGGCATGGCAGAGGGACAGTCCGGGCACTGCTTAGCCACTTTCGCCGCAGCCGCTGGGACAGGACATACAAATAGGTACACTGTTTATAAAAAGGCACTTTCATTGGGTCAAACATGGAGcatggttcaaatccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaaggcagttaacccgatgttcctaggccgtcattgtaaattagaatttcttcttaactgacttgcctagttaaataaaggtaaaataaaaaataaattagcaGATGCTTTGAAACGCAGGCATTTATATTTAACATGTATTCAGTACATGTAAAACTGCGATGTATCGGGCACCACGCTCCCACAGAGTCATCAGAACCACATGACAAACGACGTGACATCACCCAACTACTACACGGTGGATGGATGTTGTTTAGTGGGAAGCGCTGTAATGAATGTTTTGGAGAGGACCAAGCCGTGGACTGTTACCTGGTCTGACCACACAGTTGTAGTTGTACAGACGAACCACTCTATGGACTCTGTTCATGTAGATAACAGCCTTGCATTGACCGTAACCGGTGTGTTTTCAGCCTTGGGGACCTCACAGTCCTTTGCGTTTTTCTTGCTGACCACGTGGCAGTCAGTCTCCAGCACATCCATGGTCAGGTAGAACACAACCCCTGTTTCCCCCTGAAACAGAGATAGAAATACAGACCAATCAGCACACTGGAGTCAACATTCATTCCCATGTGGCTGGTACTGAAAAACAAAGACAAGAGGATTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU518216 lncRNA downstream 17563 92909134 ~ 92910234 (-) True G457523
TU518169 lncRNA downstream 22631 92881393 ~ 92905166 (-) False G457491
TU518181 lncRNA downstream 51651 92871750 ~ 92876146 (-) True G457492
TU518211 lncRNA downstream 57259 92869482 ~ 92870538 (-) True G457518
TU518201 lncRNA downstream 79672 92847307 ~ 92848125 (-) True G457510
TU518231 lncRNA upstream 20189 92951828 ~ 92957705 (-) False G457538
TU518236 lncRNA upstream 20189 92951828 ~ 92957705 (-) True G457538
TU518322 lncRNA upstream 135436 93067075 ~ 93067276 (-) True G457606
TU518324 lncRNA upstream 140044 93071683 ~ 93071938 (-) True G457608
TU518333 lncRNA upstream 152103 93083742 ~ 93083943 (-) True G457617
XM_036978826.1 mRNA downstream 69473 92673694 ~ 92858324 (-) True anos1b
XM_036978830.1 mRNA downstream 284760 92636855 ~ 92643037 (-) True senp5
XM_036978828.1 mRNA downstream 285535 92636855 ~ 92642262 (-) False senp5
XM_036978832.1 mRNA downstream 285535 92636855 ~ 92642262 (-) False senp5
XM_036978831.1 mRNA downstream 285540 92636855 ~ 92642257 (-) False senp5
XM_036978795.1 mRNA upstream 70432 93002071 ~ 93041479 (-) True cp
XM_036978837.1 mRNA upstream 113259 93044898 ~ 93062301 (-) True tm4sf18
XR_002473391.2 mRNA upstream 141731 93073370 ~ 93078003 (-) True LOC110522899
XM_021604747.2 mRNA upstream 168612 93100251 ~ 93164510 (-) False wwtr1
XM_021604748.2 mRNA upstream 168612 93100251 ~ 93164513 (-) True wwtr1
TU518094 other downstream 296985 92629338 ~ 92630812 (-) False LOC110524822
TU518092 other downstream 296985 92629472 ~ 92630812 (-) False LOC110524822
TU518093 other downstream 296985 92629541 ~ 92630812 (-) False LOC110524822
TU518091 other downstream 296985 92629605 ~ 92630812 (-) True LOC110524822
TU518070 other downstream 353043 92574383 ~ 92574754 (-) True G457423
TU518227 other upstream 8867 92940506 ~ 92943525 (-) True G457534
TU518230 other upstream 19039 92950678 ~ 92966992 (-) True G457537
TU518311 other upstream 86755 93018394 ~ 93020280 (-) True G457595
TU518477 other upstream 510261 93441900 ~ 93442413 (-) True G457740
TU518479 other upstream 530713 93462352 ~ 93463079 (-) True G457742

Expression Profile