RNA id: TU518216


Basic Information

Item Value
RNA id TU518216
length 1048
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G457523
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 92909134 ~ 92910234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccccggtcatccctactgcctctgatctggaggactaactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaagagagaacatccctggttatccctactgcctctgatctggaggactcactaaaaagagaacatccctggtcatccctactgcaacTGATCtggactaaacagagaacatccctggtcatccctactgtctctgatctggtggactaactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaagagagaacatccctggttatccctactgcctctgatctggaggactcactaaacagagaacatccccggtcatccctactgcctctgatctggaggactaactaaacagagaacatccctggtcatccctactgtctctgatctggtggactcactaaagagagaacatccctggttatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcaacTGATCtggactaaacagagaacatccctggtcatccctactgtctctgatctggtggactcactaaacagagaacatacctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccccggtcatccctcctgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggtggactcactaaacagagaacatccctggtcatccctactgcctctgatctggtggactcactaaacagagaacatccccggtcatccctactgcctctgatctggtggactcactaaacagagaacatccctggtcatccctactgcctctgatctggtggactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU518182 lncRNA downstream 996 92816545 ~ 92908138 (-) True G457493
TU518169 lncRNA downstream 3968 92881393 ~ 92905166 (-) False G457491
TU518181 lncRNA downstream 32988 92871750 ~ 92876146 (-) True G457492
TU518211 lncRNA downstream 38596 92869482 ~ 92870538 (-) True G457518
TU518201 lncRNA downstream 61009 92847307 ~ 92848125 (-) True G457510
TU518231 lncRNA upstream 41594 92951828 ~ 92957705 (-) False G457538
TU518236 lncRNA upstream 41594 92951828 ~ 92957705 (-) True G457538
TU518322 lncRNA upstream 156841 93067075 ~ 93067276 (-) True G457606
TU518324 lncRNA upstream 161449 93071683 ~ 93071938 (-) True G457608
TU518333 lncRNA upstream 173508 93083742 ~ 93083943 (-) True G457617
XM_036978826.1 mRNA downstream 50810 92673694 ~ 92858324 (-) True anos1b
XM_036978830.1 mRNA downstream 266097 92636855 ~ 92643037 (-) True senp5
XM_036978828.1 mRNA downstream 266872 92636855 ~ 92642262 (-) False senp5
XM_036978832.1 mRNA downstream 266872 92636855 ~ 92642262 (-) False senp5
XM_036978831.1 mRNA downstream 266877 92636855 ~ 92642257 (-) False senp5
XM_036978795.1 mRNA upstream 91837 93002071 ~ 93041479 (-) True cp
XM_036978837.1 mRNA upstream 134664 93044898 ~ 93062301 (-) True tm4sf18
XR_002473391.2 mRNA upstream 163136 93073370 ~ 93078003 (-) True LOC110522899
XM_021604747.2 mRNA upstream 190017 93100251 ~ 93164510 (-) False wwtr1
XM_021604748.2 mRNA upstream 190017 93100251 ~ 93164513 (-) True wwtr1
TU518094 other downstream 278322 92629338 ~ 92630812 (-) False LOC110524822
TU518092 other downstream 278322 92629472 ~ 92630812 (-) False LOC110524822
TU518093 other downstream 278322 92629541 ~ 92630812 (-) False LOC110524822
TU518091 other downstream 278322 92629605 ~ 92630812 (-) True LOC110524822
TU518070 other downstream 334380 92574383 ~ 92574754 (-) True G457423
TU518175 other upstream 15462 92925696 ~ 92931639 (-) False G457491
TU518168 other upstream 16887 92927121 ~ 92931639 (-) False G457491
TU518163 other upstream 16971 92927205 ~ 92931639 (-) False G457491
TU518177 other upstream 17563 92927797 ~ 92931639 (-) True G457491
TU518227 other upstream 30272 92940506 ~ 92943525 (-) True G457534

Expression Profile