RNA id: TU518236


Basic Information

Item Value
RNA id TU518236
length 2180
lncRNA type antisense_over
GC content 0.44
exon number 4
gene id G457538
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 92951828 ~ 92957705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAACATTTTtaatggtaaattcaattggctACAATCACACAATACATGATTATAACCACTGAAAATATTCTGTATACATTGTAGGCTAAACTATACATTTATTGCTCTGATAAATTTACTAGCTATCATAGTTAGTATcatAGAGTACAATGTTGTGGAATTCTTTACTTATGTGATCTTGAGATAGCAGCaacgacaacaacaaaaaggtgAACATTGTCCAGCTAGGGTAAAATAGGGGAAGTGTTTTGAGTCATCGTTCTTTCAGTTTTCCTTTGTTACCAAAGTATCTTTGTATCTCAGGAAAGTGTTAATAAGCTGTTATTGCAGTAGCGGAAGATGTTTATCAATCAAATTGGAAACCTATCCAGTCCCAGGTTAGTTTTCCTCTTGGCTCAAATCAATCCTCTTGGCTGGACAGTTGCTTGCTGCTGCTGAGGCTCTTGGAGGCGGTGGCACATGAGGGTGAGGTAGAACCACCACTATACCCAACGAGCCCTTCAGTCTGGGGGAAGCCTGATTGGAgtgtgtgtgtgcgtgttttatGGTCCTCATCTTCACTCTGATGCCCACTGTCTCCTCTGACATGGGCCTCCTCCTCTGCCTTCCTCTGGTTCAAAGATTTCACACTTCACCTCGATGGGGAGTTTGGTCTGAAACGTGCCATCATCCAGAGTGGTGTGAGAGCCTGTGCAGAAGGTCTTGTGCTAGGCGACAGAAAACGGAATTGGATTGCTCAAATAGAGAAACACGATATGATGCTAGTGATCTCACTGAGACTAATGTGGTTCTACAGTAGTCTGCTTTCCTCTGCTGAATAGCTGTCAGCTTGCCACATACAAATCATGATTTTTGTTCCCTTTTCCCTATTTCAAAACATGTGATAGACAGTGTGTAGATGTAGCGTGGTACTGTACTCACTGCAAATTCACAGTCCATCATTTTACACTGGGTCAAATCGACATCAGGAGTGTCCTTAGCACAGACCGTCTCTCTGATGGTGAACTCTACAAAATAGACCGTACCCACCACCCACTGTGAAGACGAAGCAGTATACTTTGAACTTGAAAtctactgaagaaaaatataaacgcaacagataaagtgttggtcccatatttcatgagctgaaataaaacatcccagaaatattccataagtacaaaaagcttatttagctAAAATtttgtacacaaatttgtttttgttttcagatttatcctttgccaagataatccatctacctgacaggtgtggcatatcaagaagctgattaagctgcatgatcattacacaggtgcaccttgtgctggggacaataaaacgcCACTCTATTCTGTGCaattttatcacacaacacaatgccacagatgtctcaaattggcatactggctgcaggaatgtccaccaggactgttgccagagaatgtaatgctCATTTCTCTACGATAAGCCgtctccaatgtcgttttagagaatttggcagtatgttcaaccggcctcacaaccgcagaccacgtgtaaccacgccagccaaggacctccacatccggcttcttcacctgtaggatcgtctgagaccagccacccaggcaGCTGACTGAACTgttggtttgcacaaccaaataatttttgCACAAACTgccagaaaccgtctcagggaagctcatctgcatgctcatcgtcctcactagggtcttgacctgactgcagtttggtgtcgtaaccgacttcaggcatgctggagaagtgtgctcttcccggatgaatcccggtttcaactgtaccgggcagatggcagacaacgtgtatggcgtcgtgtgggtgagcggttaactaatgtcaacattgtgaaaagAGATCcctatggtggtggtggggttatggtatgggcaggcataagctatggacaacgagcgcagttgcattttatcgatggcagtttgaTTGCCATCgaggtccattgtcgtgccattcatccgtcaccatcacctcatgtttcagcatgataatgcacggccccatgtcacaaggatctgtacacaaatcCTGGAAGttaaatgtcccagttcttccctgGCCTGCAAAGTCACcatacatgtcacccattgagcatgtttgggatgctccggATCGACGTGTGTTCcaattcccgccaatatccagcaacttcgcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU518216 lncRNA downstream 41594 92909134 ~ 92910234 (-) True G457523
TU518169 lncRNA downstream 46662 92881393 ~ 92905166 (-) False G457491
TU518181 lncRNA downstream 75682 92871750 ~ 92876146 (-) True G457492
TU518211 lncRNA downstream 81290 92869482 ~ 92870538 (-) True G457518
TU518201 lncRNA downstream 103703 92847307 ~ 92848125 (-) True G457510
TU518322 lncRNA upstream 109370 93067075 ~ 93067276 (-) True G457606
TU518324 lncRNA upstream 113978 93071683 ~ 93071938 (-) True G457608
TU518333 lncRNA upstream 126037 93083742 ~ 93083943 (-) True G457617
TU518339 lncRNA upstream 133879 93091584 ~ 93091787 (-) True G457623
TU518372 lncRNA upstream 225653 93183358 ~ 93183558 (-) True G457651
XM_036978826.1 mRNA downstream 93504 92673694 ~ 92858324 (-) True anos1b
XM_036978830.1 mRNA downstream 308791 92636855 ~ 92643037 (-) True senp5
XM_036978828.1 mRNA downstream 309566 92636855 ~ 92642262 (-) False senp5
XM_036978832.1 mRNA downstream 309566 92636855 ~ 92642262 (-) False senp5
XM_036978831.1 mRNA downstream 309571 92636855 ~ 92642257 (-) False senp5
XM_036978795.1 mRNA upstream 44366 93002071 ~ 93041479 (-) True cp
XM_036978837.1 mRNA upstream 87193 93044898 ~ 93062301 (-) True tm4sf18
XR_002473391.2 mRNA upstream 115665 93073370 ~ 93078003 (-) True LOC110522899
XM_021604747.2 mRNA upstream 142546 93100251 ~ 93164510 (-) False wwtr1
XM_021604748.2 mRNA upstream 142546 93100251 ~ 93164513 (-) True wwtr1
TU518227 other downstream 8303 92940506 ~ 92943525 (-) True G457534
TU518175 other downstream 20189 92925696 ~ 92931639 (-) False G457491
TU518311 other upstream 60689 93018394 ~ 93020280 (-) True G457595
TU518477 other upstream 484195 93441900 ~ 93442413 (-) True G457740
TU518479 other upstream 504647 93462352 ~ 93463079 (-) True G457742
TU518683 other upstream 903141 93860846 ~ 93863614 (-) True G457909
TU520343 other upstream 2600985 95558690 ~ 95559210 (-) True G459282

Expression Profile