RNA id: TU518411


Basic Information

Item Value
RNA id TU518411
length 2257
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G457684
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 93268244 ~ 93270500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatcgtcattacCACCATGTTGGCTGACGAAACATATTGTCCCAAAGTCCATTTATTGCATGTCACTGTTCCGAGGTAGGTTCTCCATAGGCCCATCATACGTTCCATTCCTCCACAGTGAGAGGACAAAGGGATTTTGTGTGCTACCTTCAGATTTACAATGGGTGTGAggtgtcataaaacccccacctccatacctctcctcttgATCTCTCCCCCTCTGGCGGGTGTGGCACGGAaaccaaaccggctgcgcgcacGTGCGCCATCgtgtattttgtcccccccacaccaaatgcgatcacgacacgcaggttaaaatatcaaaacaaactctgaaccaattatattattttggggaccggtcgaaaagcattaaacatttatggcaatttagctagcttgctgtcgctagctaatttgtcctgggatataaacattgagttgttattttacctgaaatgcacaaggtcctctactccgccaattaatccacacataaaacggtcaaccgaatcgtttctagtcatctctcctccttccaggctttttcttctcttgactttatattgcgatggacaactttcataaattaggtgcattactgactatgttcctttttcagtcacccacgtgggtataaccaatgaggagatggcacgtgagtacctgcttctataaaccaatgaggagaagggagaggcagcgagatctgcgtcagaaatagaactgtgaCTTCTaatttagcccttggcaacgcagacgctcgttggcgcgcgcaaTTATTGAATAACgtagatttctaaatgtattttgcaacgctcgcgcacccaacgcgagcggtgtagtcagcctgggAGAGGTGTCTCTTGTAGGAGTGTGGTCCACATGGTAACCTGACCCGAACAGGCCAGTCATGGGGGGGTTGattggtttgggggggggggggggggtgctgtggTCTATAGGTCCTCTCGGCGTGGGGGTCCGCGGTGGAatattagagctgtcaaatccacaaacGGCTCTTGGCTGCATAAAGTCgcattaagagaaatcccatgTAGACAAGTTTGACCACTGGAATGTAAAATGTACACTAATCGAATAGGCTGATAACAAttctcatttcattttcaatttgaGCTGAATTATTTCTACACTTTCTCATTCTGAACATCGCCAAAACATCAGCTCTGCATGCGGGTGTCGGCTATCGCCAGTTAACGATTGAGGCCTCTACTCAATCCGTATTGCTGAAGCGTTATAGAttttacacaaaaaaaaagtAATTCCCGATTGAGCCTACATGTGCAGCGTTTAACATGAATTCCGTCGCTGAATTTCCACGATTACGGATTGAATAGTCTGTAAATCTAGGTCTAAAGATTCAGGCAACCCAATCCCCCTCTGTCTGTGGTATTGTGTGCCATCCGCTGTCAAGCGTTCTTCTACAAGGACCCATCCCTGTTGCTGTATGAGAGGAGAGGTATGAGGTCTAGCAGTTGATTACTGCGCTACATTAGATATTCTCTAAAGGTACTAGCTAATGATGCATTATGGTTGCAGATGCCAGGAAGTTTCAGACCACATACCTCGCAGCCAGCCATATAGAGTAAAATCATACAGGGGGGGGAGTAAGAGATGTTCCTGTAACAAAGGAAGGGCATCTGTCATCTAAGGTTCAAGTATGTTGACATCGCACCATGTGATCGTTCTCTCCATGCAGAACCAGTCCTCAGGTAACACAACCTCATGGCAACAAGGGTTCATGACAAAAAAGGTGGCTTGGTCTCAATCTTTGTGTCCCTGTGAAATGTCTTAATTAACTACAGCGATCTGAAAAGGCACAGACCATCTTATGGAGCCACAATTTACTCTCAAACTACAAATTGTTTGAAAGTATGTAATTTGACTTAGTTTGTGTGTACGCATTGATATGGAGATATgcctttaatttaaaaaaaaaacgagtTCTGtcattgagctgttcttgtctattgatgttctgtgttatgtcatgtttactgttttgtgttggaccccaggaagagtagctgctgctttagcaacagctaatagggatcctaatGAAATGTAGTTGATTTAACAGCTCAGGTATTTGACCCAGCTGTGACTGTTAGTTTGAGCCCAATGGAAACAGGGCATCCCTGTTAAAACACAAACTTCCTGGAATTTCCATTTGGAAAATGTTCCAGACGTGCCCTTAGACAACTATATAATCAGGCAGGTACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU518285 lncRNA downstream 43242 93221917 ~ 93225002 (-) True G457573
TU518379 lncRNA downstream 49161 93197623 ~ 93219083 (-) True G457657
TU518382 lncRNA downstream 61885 93206017 ~ 93206359 (-) True G457660
TU518374 lncRNA downstream 82582 93185459 ~ 93185662 (-) True G457653
TU518373 lncRNA downstream 83477 93184520 ~ 93184767 (-) True G457652
TU518412 lncRNA upstream 455 93270955 ~ 93271165 (-) True G457685
TU518413 lncRNA upstream 918 93271418 ~ 93271624 (-) True G457686
TU518416 lncRNA upstream 4682 93275182 ~ 93275429 (-) True G457689
TU518419 lncRNA upstream 13496 93283996 ~ 93284230 (-) True G457692
TU518424 lncRNA upstream 21525 93292025 ~ 93292500 (-) True G457696
XM_021604753.2 mRNA downstream 28566 93225313 ~ 93239678 (-) True lonp1
XM_036978840.1 mRNA downstream 57145 93189533 ~ 93211099 (-) True lmnb2
XM_021604751.2 mRNA downstream 89737 93170834 ~ 93178507 (-) True commd2
XM_021604750.2 mRNA downstream 89743 93170834 ~ 93178501 (-) False commd2
XR_005051901.1 mRNA downstream 89743 93170834 ~ 93178501 (-) False commd2
XM_036978842.1 mRNA upstream 29990 93300490 ~ 93410598 (-) False LOC110524839
XM_036978843.1 mRNA upstream 29990 93300490 ~ 93410598 (-) False LOC110524839
XM_036978844.1 mRNA upstream 29990 93300490 ~ 93410599 (-) False LOC110524839
XM_036978845.1 mRNA upstream 29990 93300490 ~ 93412367 (-) False LOC110524839
XM_036978847.1 mRNA upstream 29992 93300492 ~ 93388443 (-) False LOC110524839
TU518311 other downstream 247964 93018394 ~ 93020280 (-) True G457595
TU518230 other downstream 301252 92950678 ~ 92966992 (-) True G457537
TU518227 other downstream 324719 92940506 ~ 92943525 (-) True G457534
TU518163 other downstream 336605 92927205 ~ 92931639 (-) False G457491
TU518477 other upstream 171400 93441900 ~ 93442413 (-) True G457740
TU518479 other upstream 191852 93462352 ~ 93463079 (-) True G457742
TU518683 other upstream 590346 93860846 ~ 93863614 (-) True G457909
TU520343 other upstream 2288190 95558690 ~ 95559210 (-) True G459282
TU520386 other upstream 2331923 95602423 ~ 95602927 (-) True G459323

Expression Profile