RNA id: TCONS_00031803


Basic Information

Item Value
RNA id TCONS_00031803
length 1332
RNA type mRNA
GC content 0.47
exon number 10
gene id XLOC_016109
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5178172 ~ 5199431 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAACCACGTGGTCGGACTGTCACAAGTGACGTCCAGTCGGTAGAAGGACAGCATGGCGAGCAAAGATCCCGGAAATTTTTTGCAGCAGCTCAGGCAGATTGCCAGCAGAATGGGCTCTGGTCCTCGAGGCGCTGGTTTGGGTGTGAAGCTGCTCATTGGAGCTGGAGCCCTCGCCTATGGGGTCAAAGAAGCCACATATACAGTGGAGGGTGGTCAGAGAGCCGTTATCTTCAGCAGAATCGGAGGGATGCAGATGGACACTGTACTTGCAGAAGGATTGCACTTCAGGATGCCGTGGTTCCAGTATCCTATTATCTATGATATCCGAGCCAGGCCCAGGAAGATTTCCTCTCTCACTGGAAGCAAAGATCTTCAGATGGTAAACATTGGTCTACGTGTGTTGTCTCGCCCGGTTGCCTCCCAATTGCCAATCATGTACCAGCAGCTGGGGAAGGACTACGATGAGCGTGTGCTTCCTTCCATCGTCAACGAAGTGCTCAAGAGCGTCGTGGCCAAGTTTAACGCCTCCCAGCTGATCACACAGAGAGCTCAGGTGTCACTGCTCATAAGGCGAGATCTGATCGAGAGGGCTAAAGACTTTAACATCATCCTGGATGACGTGGCTATCACTGAGCTCAGCTTCAGCAAAGAATACACAGCTGCTGTGGAGGCCAAACAAGTCGCCCAGCAGGAGGCGCAGAGGGCTCAGTTCTTCGTAGAGAAGGCCAAGCAGGACCAGAGACAGAAGATTATCCAGGCTGAAGGTGAAGCTGAGGCTGCTAAAATGTTGGGTCAAGCTGTTACGAAGAACCCGGGTTACCTGAAACTCAGACGCATCAGAGCAGCACAAAATATTGCCAAAACGGTGGCAGCTTCTCAGAACAAGGTGTACCTAAGTGCAGACAGCCTGGTTCTGAACCTCCAGGACAGCTCCTTTAACAACCTGTCACTGGGGAAATGAGAAGAGCATCATCCATGAAGAACATATGCATTCCATATGTAAGCAGTGTTTGCTGAGCCACTATGTTTATGCCCTCTTCTTCAACAGACTGTGAGCAGAGTCTCTACTCAGTGCAGTTTTCTGCTGGGGGCTCAGATCAGACACGGGCCGGGCAGCCTTACAGATTCACATCATATACATGTACATGCACTTGTTTGTCATTCAGCAGCTCTTTCAAACTCAATTTCGGTAAATCCAGCTTCAGAACAAGTGGGTTAACTAATAGTgcttgcaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3141 Predicted to be involved in mitochondrion organization. Predicted to be located in mitochondrial inner membrane and plasma membrane. Predicted to be active in mitochondrion. Orthologous to human PHB2 (prohibitin 2).

Ensembl:

ensembl_id ENSDART00000063384

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031791 lncRNA downstream 363900 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031790 lncRNA downstream 380660 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00033348 lncRNA downstream 1059357 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00033762 lncRNA downstream 1658006 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00031772 lncRNA downstream 1761965 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033763 lncRNA upstream 250350 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031813 lncRNA upstream 263977 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00031815 lncRNA upstream 275112 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031816 lncRNA upstream 275112 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031822 lncRNA upstream 357938 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00031802 mRNA downstream 43047 5131964 ~ 5135125 (-) True XLOC_016108
TCONS_00031794 mRNA downstream 103360 4900213 ~ 5074812 (-) False XLOC_016107
TCONS_00031801 mRNA downstream 106284 5070918 ~ 5071888 (-) True XLOC_016107
TCONS_00031795 mRNA downstream 163233 4903514 ~ 5014939 (-) False XLOC_016107
TCONS_00031797 mRNA downstream 253147 4907374 ~ 4925025 (-) False XLOC_016107
TCONS_00031804 mRNA upstream 139328 5338759 ~ 5356686 (-) True XLOC_016110
TCONS_00031805 mRNA upstream 197633 5397064 ~ 5404466 (-) False XLOC_016111
TCONS_00031806 mRNA upstream 197677 5397108 ~ 5399437 (-) True XLOC_016111
TCONS_00031807 mRNA upstream 211001 5410432 ~ 5443745 (-) False XLOC_016112
TCONS_00031808 mRNA upstream 211439 5410870 ~ 5443681 (-) False XLOC_016112
TCONS_00031800 other downstream 134322 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 163543 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031799 other downstream 193768 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 253045 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031786 other downstream 607069 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031821 other upstream 355234 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031833 other upstream 842608 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 1566862 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1709231 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 3434809 8634240 ~ 8635132 (-) True XLOC_016162

Expression Profile

Expression of TCONS_00031803 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.
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Expression of TCONS_00031803 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_00538178_00547944.mRNA True 1203 mRNA 0.50 10 CI01000003 538085 ~ 547983 (+)