RNA id: TU520319


Basic Information

Item Value
RNA id TU520319
length 2413
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G459268
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 95514866 ~ 95536488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacagtagtctaatattatagaagagaggaccagaactttagtctgtggttgaagagaggaccagaacaataGTCTGTGGTtaaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttaaagaagacaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagacaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgatgttatagaagagaggaccagaacagtagtctaatattatagaagagaggaccagaactttagtctgtggttgaagagaggaccagaacaataGTCTGTGGTtaaagagaggaccagaacagtagtctaatgttatagaagacaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagacaggaccagaacagtactctaatgttatagaagagaggaccagaacattagtctaatgttatagaagacaggaccagaacagtactctaatgttatagaagagaggaccagaacattagtctaatgttatagaagagaggaccagaacagtagtctgtggttgaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctgatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctgatgttacagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttgtaGAAGAGATGACCAGAAGAGTAGTCTGtggttgaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttataggagaggaccagaacagtagtctaatgttctagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccataacagtagtctaatgttatagaagagaggaccagaacagtagtctactgttatagaagagaggaccagaacagtagtctaatgttaaagaagacaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtactctaatgttatagaagacaggaccagaacagtggtctaatgttatagaagagaggaccagaacagtagtctgatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctaatattataaagagaggaccagaactttagtctgtggttgaagagaggaccagaacagtagtctgttataggagaggaccagaacagtagtctgtggttaaagagaggaccagaacagtagtctaatgttaaagaagacaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagacaggaccagaacagtagtctaatgttatagaagagaggaccagaacattagtctaatgttatagaagagaggaccagaacagtagtctgtggttgaagagaggaccagtagagtagtctgttatagaagagaggaccagaacagtagtctgatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctgatgttacagaagagagaaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttgtaGAAGAGATGACCAGAAGAGTAGTCTGtggttgaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttataggagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttctagaatacaggaccaaaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU520286 lncRNA downstream 30766 95483860 ~ 95484100 (-) True G459246
TU520269 lncRNA downstream 45795 95467564 ~ 95469071 (-) True G459232
TU520242 lncRNA downstream 68209 95446338 ~ 95446657 (-) True G459212
TU520223 lncRNA downstream 92910 95421650 ~ 95421956 (-) True G459195
TU520220 lncRNA downstream 98453 95416201 ~ 95416413 (-) True G459192
TU520318 lncRNA upstream 107 95521034 ~ 95536488 (-) True G459268
TU520327 lncRNA upstream 17236 95538163 ~ 95542980 (-) True G459271
TU520344 lncRNA upstream 41079 95562006 ~ 95562215 (-) True G459283
TU520363 lncRNA upstream 66842 95587769 ~ 95588078 (-) True G459302
TU520394 lncRNA upstream 102921 95623848 ~ 95624134 (-) True G459329
XM_021604810.2 mRNA downstream 165739 95345148 ~ 95349127 (-) True sox14
XM_021604809.2 mRNA downstream 389942 95111855 ~ 95124924 (-) True LOC110524856
XR_005051916.1 mRNA downstream 460950 94981424 ~ 95053916 (-) False hs2st1b
trnap-ugg-7 mRNA upstream 176234 95697161 ~ 95697232 (-) True trnap-ugg-7
XM_036978908.1 mRNA upstream 178509 95699436 ~ 95722598 (-) False hdlbpa
XM_036978909.1 mRNA upstream 178509 95699436 ~ 95722598 (-) True hdlbpa
XM_021604832.2 mRNA upstream 392947 95913874 ~ 95922379 (-) True dtymk
XM_036978921.1 mRNA upstream 411059 95931986 ~ 95957021 (-) False zgc:103559
TU518683 other downstream 1651252 93860846 ~ 93863614 (-) True G457909
TU518479 other downstream 2051787 93462352 ~ 93463079 (-) True G457742
TU518477 other downstream 2072453 93441900 ~ 93442413 (-) True G457740
TU518311 other downstream 2494586 93018394 ~ 93020280 (-) True G457595
TU518230 other downstream 2547874 92950678 ~ 92966992 (-) True G457537
TU520343 other upstream 37763 95558690 ~ 95559210 (-) True G459282
TU520386 other upstream 81496 95602423 ~ 95602927 (-) True G459323
TU520966 other upstream 666541 96187468 ~ 96187983 (-) True G459813
TU521206 other upstream 939980 96460907 ~ 96464598 (-) False G460020
TU521633 other upstream 1259916 96780843 ~ 96782021 (-) True G460331

Expression Profile