RNA id: TU520343


Basic Information

Item Value
RNA id TU520343
length 521
RNA type TUCP
GC content 0.38
exon number 1
gene id G459282
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 95558690 ~ 95559210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GtaatattctatgtttcatgGAGTCGTGGCGGAACAAGGACATAGATAATATACAGTTCATCTTGCTGGCTTTTCCATGCATCGTCGAGGACGTTCGGCAGGCCAGAGGCAAACAtaagatgaggggaggaggggtgtgtttttgctcacctgagttagaatacctcatgatgaGCTGCAGACCAAGAgggttttcatctatattttcatCAGACCAACCATCTATATTTTCATCAGACCAACCATCTATATTTTCATCAGACCAACCATCTATATTTTCATCAGACCAACCATCTATATTTTCATCAGACCAACCATCTATATTTTCATCAGACCAACCATCTATATTTTCATCAGACCAACCATCTATATTTTCATCAGACCAACCATCTATCTATATTTTCATCAGACCAACCATCTATATTTTCATCAGACAAACCATCTATATTTTCATCAGACCAACCATCTATATTTTCATCAGACCAACCATCTATATTTTCATCAGACCAACCATCTATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU520327 lncRNA downstream 15710 95538163 ~ 95542980 (-) True G459271
TU520320 lncRNA downstream 22202 95514866 ~ 95536488 (-) False G459268
TU520318 lncRNA downstream 22202 95521034 ~ 95536488 (-) True G459268
TU520319 lncRNA downstream 37763 95514866 ~ 95520927 (-) False G459268
TU520286 lncRNA downstream 74590 95483860 ~ 95484100 (-) True G459246
TU520344 lncRNA upstream 2796 95562006 ~ 95562215 (-) True G459283
TU520363 lncRNA upstream 28559 95587769 ~ 95588078 (-) True G459302
TU520394 lncRNA upstream 64638 95623848 ~ 95624134 (-) True G459329
TU520398 lncRNA upstream 74978 95634188 ~ 95634413 (-) True G459333
TU520400 lncRNA upstream 76804 95636014 ~ 95636535 (-) True G459335
XM_021604810.2 mRNA downstream 209563 95345148 ~ 95349127 (-) True sox14
XM_021604809.2 mRNA downstream 433766 95111855 ~ 95124924 (-) True LOC110524856
XM_036978904.1 mRNA downstream 504774 94981424 ~ 95053916 (-) False hs2st1b
XR_005051915.1 mRNA downstream 504774 94981424 ~ 95053916 (-) False hs2st1b
XR_005051916.1 mRNA downstream 504774 94981424 ~ 95053916 (-) False hs2st1b
trnap-ugg-7 mRNA upstream 137951 95697161 ~ 95697232 (-) True trnap-ugg-7
XM_036978908.1 mRNA upstream 140226 95699436 ~ 95722598 (-) False hdlbpa
XM_036978909.1 mRNA upstream 140226 95699436 ~ 95722598 (-) True hdlbpa
XM_021604832.2 mRNA upstream 354664 95913874 ~ 95922379 (-) True dtymk
XM_036978921.1 mRNA upstream 372776 95931986 ~ 95957021 (-) False zgc:103559
TU518683 other downstream 1695076 93860846 ~ 93863614 (-) True G457909
TU518479 other downstream 2095611 93462352 ~ 93463079 (-) True G457742
TU518477 other downstream 2116277 93441900 ~ 93442413 (-) True G457740
TU518311 other downstream 2538410 93018394 ~ 93020280 (-) True G457595
TU518230 other downstream 2591698 92950678 ~ 92966992 (-) True G457537
TU520386 other upstream 43213 95602423 ~ 95602927 (-) True G459323
TU520966 other upstream 628258 96187468 ~ 96187983 (-) True G459813
TU521206 other upstream 901697 96460907 ~ 96464598 (-) False G460020
TU521633 other upstream 1221633 96780843 ~ 96782021 (-) True G460331
TU521666 other upstream 1265025 96824235 ~ 96829153 (-) False G460354

Expression Profile