RNA id: TU520623



Basic Information


Item Value
RNA id TU520623
length 316
lncRNA type antisense_over
GC content 0.55
exon number 1
gene id G459513
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 95753248 ~ 95753563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTGGCTAATCTCCCTGATCTTGGCAATACTAGAGAAAAGGGACTTGTGGTCTCTGGGTGACAGGGCTAGACGCAGGGTAGATGACTTCATGAAATGGTTCACAGCGACACCCAGCCTCTCCAGGTAGGACTGCTCTGTCGTCACCACCTCATACATACTCTGGGacacgagagagaggagggagggagggagggagacagagagagagagaaagggagagagggagggagacagagagagagagaaagggagagagggagggagacagagagagagcgagaaagggagagagggagggagacagagagagagaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU520622 lncRNA downstream 732 95751989 ~ 95752516 (-) True G459512
TU520613 lncRNA downstream 6100 95746925 ~ 95747148 (-) True G459509
TU520610 lncRNA downstream 9269 95743609 ~ 95743979 (-) True G459506
TU520599 lncRNA downstream 59341 95693647 ~ 95693907 (-) True G459495
TU520598 lncRNA downstream 59879 95693100 ~ 95693369 (-) True G459494
TU520625 lncRNA upstream 2390 95755953 ~ 95756226 (-) True G459515
TU520627 lncRNA upstream 6418 95759981 ~ 95760190 (-) True G459517
TU520628 lncRNA upstream 11237 95764800 ~ 95765651 (-) True G459518
TU520631 lncRNA upstream 22231 95775794 ~ 95776782 (-) False G459521
TU520632 lncRNA upstream 22231 95775794 ~ 95776782 (-) True G459521
XM_036978908.1 mRNA downstream 30650 95699436 ~ 95722598 (-) False hdlbpa
XM_036978909.1 mRNA downstream 30650 95699436 ~ 95722598 (-) True hdlbpa
trnap-ugg-7 mRNA downstream 56016 95697161 ~ 95697232 (-) True trnap-ugg-7
XM_021604810.2 mRNA downstream 404121 95345148 ~ 95349127 (-) True sox14
XM_021604809.2 mRNA downstream 628324 95111855 ~ 95124924 (-) True LOC110524856
XM_021604832.2 mRNA upstream 160311 95913874 ~ 95922379 (-) True dtymk
XM_036978921.1 mRNA upstream 178423 95931986 ~ 95957021 (-) False zgc:103559
XM_036978920.1 mRNA upstream 178423 95931986 ~ 95957022 (-) True zgc:103559
XR_005051922.1 mRNA upstream 184223 95937786 ~ 95939648 (-) False LOC118964700
trnap-ugg-8 mRNA upstream 1086939 96840502 ~ 96840573 (-) True trnap-ugg-8
TU520386 other downstream 150321 95602423 ~ 95602927 (-) True G459323
TU520343 other downstream 194038 95558690 ~ 95559210 (-) True G459282
TU518683 other downstream 1889634 93860846 ~ 93863614 (-) True G457909
TU518479 other downstream 2290169 93462352 ~ 93463079 (-) True G457742
TU518477 other downstream 2310835 93441900 ~ 93442413 (-) True G457740
TU520966 other upstream 433905 96187468 ~ 96187983 (-) True G459813
TU521206 other upstream 707344 96460907 ~ 96464598 (-) False G460020
TU521633 other upstream 1027280 96780843 ~ 96782021 (-) True G460331
TU521666 other upstream 1070672 96824235 ~ 96829153 (-) False G460354
TU522022 other upstream 1274956 97028519 ~ 97030389 (-) True G460623

Expression Profile