RNA id: TU520632


Basic Information

Item Value
RNA id TU520632
length 938
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G459521
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 95775794 ~ 95776782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTATTTTCATAAAGAATTCAATTGCAGTAAGTTATAACGATATTCTGTCATATGTCAGTTCAATGAAATAAAATGTGTATAAACAGAATAAGAAACATAGTAAGAATAAACACTTAGGTTCAGAGTAAATTAAAAGCTGAACATTATCAACTGACTGAAATACATCAAGAGTGTGACTGGTTATATCtcctctgcatcccaaatggcaaccctttccctatatagtgcactacttttgaccagagccctattggccctgATCAGAAGAAGTGCATCATgcagggttctccaaccctgttcctggagagccaccctcctgtaggtttacaccagggcttttctaaccctgttcctggagagctaccctcctgtaggtttacaccagggcttccgaaccctgttcctggagagctaccctcctgtaggtttacaccagggctctccaaccctgttcctggagatctaccctcCTGTAAGTttacaccagggctctccaaccctgttcctggagagctaccatcctgtaggttttcactccaaccccattTGAAACGAACCTAATTCAGTTCATCAACCGTCTAATTATTGTGAACGCCCTGATATAAGGCatagatagggtgccatttgagatgcagaccTCATTCAGAAAGACCTTTCTATCTGAAGCAGGCAGTTGCCTGGGGAACAGTGTGCCGTCGGTTCAGGATGCGGTTGGCAGTCTGTAAAACATGGTAGCGCTGCCTGAGGTGTTTCCTCTGGACGTACTCATTGGTGACCTGCACCGCACAGTAATCCGGGAACCAGCCCCGCTCACCGTCCGCAAGTCTCCTGCCCTCTAGGAAACCTGCGATAGCGAGACATGTtgttagtgggggggggggtatgaagATGGACTTCCAAGACATGATTACAAGCAGTATTGGGATTGAGAAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU520628 lncRNA downstream 10143 95764800 ~ 95765651 (-) True G459518
TU520627 lncRNA downstream 15604 95759981 ~ 95760190 (-) True G459517
TU520625 lncRNA downstream 19568 95755953 ~ 95756226 (-) True G459515
TU520623 lncRNA downstream 22231 95753248 ~ 95753563 (-) True G459513
TU520622 lncRNA downstream 23278 95751989 ~ 95752516 (-) True G459512
TU520673 lncRNA upstream 81288 95858070 ~ 95858736 (-) True G459557
TU520684 lncRNA upstream 91033 95867815 ~ 95868820 (-) True G459564
TU520679 lncRNA upstream 93443 95870225 ~ 95873068 (-) False G459561
TU520680 lncRNA upstream 93443 95870225 ~ 95873068 (-) False G459561
TU520681 lncRNA upstream 93443 95870225 ~ 95873068 (-) True G459561
XM_036978908.1 mRNA downstream 53196 95699436 ~ 95722598 (-) False hdlbpa
XM_036978909.1 mRNA downstream 53196 95699436 ~ 95722598 (-) True hdlbpa
trnap-ugg-7 mRNA downstream 78562 95697161 ~ 95697232 (-) True trnap-ugg-7
XM_021604810.2 mRNA downstream 426667 95345148 ~ 95349127 (-) True sox14
XM_021604809.2 mRNA downstream 650870 95111855 ~ 95124924 (-) True LOC110524856
XM_021604832.2 mRNA upstream 137092 95913874 ~ 95922379 (-) True dtymk
XM_036978921.1 mRNA upstream 155204 95931986 ~ 95957021 (-) False zgc:103559
XM_036978920.1 mRNA upstream 155204 95931986 ~ 95957022 (-) True zgc:103559
XR_005051922.1 mRNA upstream 161004 95937786 ~ 95939648 (-) False LOC118964700
trnap-ugg-8 mRNA upstream 1063720 96840502 ~ 96840573 (-) True trnap-ugg-8
TU520386 other downstream 172867 95602423 ~ 95602927 (-) True G459323
TU520343 other downstream 216584 95558690 ~ 95559210 (-) True G459282
TU518683 other downstream 1912180 93860846 ~ 93863614 (-) True G457909
TU518479 other downstream 2312715 93462352 ~ 93463079 (-) True G457742
TU518477 other downstream 2333381 93441900 ~ 93442413 (-) True G457740
TU520966 other upstream 410686 96187468 ~ 96187983 (-) True G459813
TU521206 other upstream 684125 96460907 ~ 96464598 (-) False G460020
TU521633 other upstream 1004061 96780843 ~ 96782021 (-) True G460331
TU521666 other upstream 1047453 96824235 ~ 96829153 (-) False G460354
TU522022 other upstream 1251737 97028519 ~ 97030389 (-) True G460623

Expression Profile