RNA id: TU521613


Basic Information

Item Value
RNA id TU521613
length 470
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G460315
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 96746605 ~ 96777943 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcgaggtcagtacaggtgcatcaaagctgggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccactaacactgagtggctgctgccaacacactgacactgactcaactccagccactttaataatgggaattgatgggaaatgatgtaaatatatcactagccactttaaacaatgctaccttatataaatgttacttaccctacattattcatctcatatgcatacgtatatactgtactctatatcatcgacggtatccttatgtaatacatgtatcactagccactttatactatactatgccacatgccactttgtttacatactcatctcatttgtacatactgtacccgataccatctactgtatcttgcctatgctgctctgtaccatcactcattcatatatccttatgtacatattctttatccccttacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU521597 lncRNA downstream 38907 96707436 ~ 96707698 (-) True G460300
TU521595 lncRNA downstream 47646 96695127 ~ 96698959 (-) True G460298
TU521575 lncRNA downstream 68899 96674565 ~ 96677706 (-) False G460287
TU521573 lncRNA downstream 68969 96674565 ~ 96677636 (-) False G460287
TU521643 lncRNA upstream 21236 96799179 ~ 96802642 (-) True G460340
TU521659 lncRNA upstream 46292 96824235 ~ 96831126 (-) False G460354
TU521665 lncRNA upstream 46292 96824235 ~ 96831126 (-) False G460354
TU521668 lncRNA upstream 46292 96824235 ~ 96831126 (-) False G460354
TU521670 lncRNA upstream 46292 96824235 ~ 96831126 (-) False G460354
XM_036978920.1 mRNA downstream 789583 95931986 ~ 95957022 (-) True zgc:103559
XM_036978921.1 mRNA downstream 789584 95931986 ~ 95957021 (-) False zgc:103559
XR_005051922.1 mRNA downstream 806957 95937786 ~ 95939648 (-) False LOC118964700
XM_021604832.2 mRNA downstream 824226 95913874 ~ 95922379 (-) True dtymk
XM_036978908.1 mRNA downstream 1024007 95699436 ~ 95722598 (-) False hdlbpa
trnap-ugg-8 mRNA upstream 62559 96840502 ~ 96840573 (-) True trnap-ugg-8
trnap-cgg-2 mRNA upstream 62821 96840764 ~ 96840835 (-) True trnap-cgg-2
XM_021604822.2 mRNA upstream 378105 97156048 ~ 97157070 (-) False LOC110524866
XM_036979088.1 mRNA upstream 382842 97160785 ~ 97161999 (-) True LOC118964738
XM_036978953.1 mRNA upstream 396024 97173967 ~ 97192535 (-) False LOC110524862
TU521206 other downstream 282007 96460907 ~ 96464598 (-) False G460020
TU520966 other downstream 558622 96187468 ~ 96187983 (-) True G459813
TU520386 other downstream 1143678 95602423 ~ 95602927 (-) True G459323
TU520343 other downstream 1187395 95558690 ~ 95559210 (-) True G459282
TU518683 other downstream 2882991 93860846 ~ 93863614 (-) True G457909
TU521633 other upstream 2900 96780843 ~ 96782021 (-) True G460331
TU521666 other upstream 46292 96824235 ~ 96829153 (-) False G460354
TU522022 other upstream 250576 97028519 ~ 97030389 (-) True G460623
TU522159 other upstream 490798 97268741 ~ 97269031 (-) True G460720
TU522175 other upstream 500459 97278402 ~ 97280326 (-) True G460736

Expression Profile