RNA id: TU521772



Basic Information


Item Value
RNA id TU521772
length 313
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G460424
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 96920397 ~ 96920709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caaggttttcacacactgttgctggtattttggcccattcctccatgcagatctcctctagagcagtgatgttttggggctgttgctgggcaacacggactttcaactccctccaaagattttctatggggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttacgaagccactctttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggaaggagattttcactcaaaatctcacgatacatggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU521771 lncRNA downstream 704 96919447 ~ 96919693 (-) True G460423
TU521766 lncRNA downstream 2621 96916311 ~ 96917776 (-) True G460419
TU521732 lncRNA downstream 29871 96889885 ~ 96890526 (-) True G460399
TU521722 lncRNA downstream 37967 96881083 ~ 96882430 (-) False G460391
TU521724 lncRNA downstream 37967 96881147 ~ 96882430 (-) True G460391
TU521943 lncRNA upstream 4959 96925668 ~ 96944657 (-) True G460564
TU521957 lncRNA upstream 27995 96948704 ~ 96948956 (-) True G460576
TU521960 lncRNA upstream 31608 96952317 ~ 96952530 (-) True G460579
TU521961 lncRNA upstream 32038 96952747 ~ 96952959 (-) True G460580
TU521962 lncRNA upstream 33848 96954557 ~ 96954946 (-) True G460581
trnap-cgg-2 mRNA downstream 79562 96840764 ~ 96840835 (-) True trnap-cgg-2
trnap-ugg-8 mRNA downstream 79824 96840502 ~ 96840573 (-) True trnap-ugg-8
XM_036978920.1 mRNA downstream 963375 95931986 ~ 95957022 (-) True zgc:103559
XM_036978921.1 mRNA downstream 963376 95931986 ~ 95957021 (-) False zgc:103559
XM_021604822.2 mRNA upstream 235339 97156048 ~ 97157070 (-) False LOC110524866
XM_036979088.1 mRNA upstream 240076 97160785 ~ 97161999 (-) True LOC118964738
XM_036978953.1 mRNA upstream 253258 97173967 ~ 97192535 (-) False LOC110524862
XM_036978954.1 mRNA upstream 253258 97173967 ~ 97192535 (-) True LOC110524862
XM_036978959.1 mRNA upstream 836662 97757371 ~ 97783785 (-) False si:dkey-66a8.7
TU521666 other downstream 91244 96824235 ~ 96829153 (-) False G460354
TU521633 other downstream 138376 96780843 ~ 96782021 (-) True G460331
TU521206 other downstream 455799 96460907 ~ 96464598 (-) False G460020
TU520966 other downstream 732414 96187468 ~ 96187983 (-) True G459813
TU520386 other downstream 1317470 95602423 ~ 95602927 (-) True G459323
TU522022 other upstream 107810 97028519 ~ 97030389 (-) True G460623
TU522159 other upstream 348032 97268741 ~ 97269031 (-) True G460720
TU522175 other upstream 357693 97278402 ~ 97280326 (-) True G460736
TU522501 other upstream 587400 97508109 ~ 97508631 (-) False G460985
TU522502 other upstream 587400 97508109 ~ 97508631 (-) True G460985

Expression Profile