RNA id: TU521943



Basic Information


Item Value
RNA id TU521943
length 256
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G460564
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 96925668 ~ 96944657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCAACCCCCgtgcagctcagtgtaaacaagcGTAACGCTACGaatttggcagatGCCGTGACGAGATCTTTAGGCCTGTAtctcgtgccattcatccgctgccatcacctcatgtttcaacatgtcacaaggatctgtacacaattcctggaagctgaaaatgtcccagttcttccatggcctgaatactcaacagacatgtcacccattgagcatgtttgggatgctctggatcgacgtgtacgacagcgtgtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU521772 lncRNA downstream 4959 96920397 ~ 96920709 (-) True G460424
TU521771 lncRNA downstream 5975 96919447 ~ 96919693 (-) True G460423
TU521766 lncRNA downstream 7892 96916311 ~ 96917776 (-) True G460419
TU521732 lncRNA downstream 35142 96889885 ~ 96890526 (-) True G460399
TU521722 lncRNA downstream 43238 96881083 ~ 96882430 (-) False G460391
TU521957 lncRNA upstream 4047 96948704 ~ 96948956 (-) True G460576
TU521960 lncRNA upstream 7660 96952317 ~ 96952530 (-) True G460579
TU521961 lncRNA upstream 8090 96952747 ~ 96952959 (-) True G460580
TU521962 lncRNA upstream 9900 96954557 ~ 96954946 (-) True G460581
TU521969 lncRNA upstream 19688 96964345 ~ 96965775 (-) True G460586
trnap-cgg-2 mRNA downstream 84833 96840764 ~ 96840835 (-) True trnap-cgg-2
trnap-ugg-8 mRNA downstream 85095 96840502 ~ 96840573 (-) True trnap-ugg-8
XM_036978920.1 mRNA downstream 968646 95931986 ~ 95957022 (-) True zgc:103559
XM_036978921.1 mRNA downstream 968647 95931986 ~ 95957021 (-) False zgc:103559
XM_021604822.2 mRNA upstream 211391 97156048 ~ 97157070 (-) False LOC110524866
XM_036979088.1 mRNA upstream 216128 97160785 ~ 97161999 (-) True LOC118964738
XM_036978953.1 mRNA upstream 229310 97173967 ~ 97192535 (-) False LOC110524862
XM_036978954.1 mRNA upstream 229310 97173967 ~ 97192535 (-) True LOC110524862
XM_036978959.1 mRNA upstream 812714 97757371 ~ 97783785 (-) False si:dkey-66a8.7
TU521666 other downstream 96515 96824235 ~ 96829153 (-) False G460354
TU521633 other downstream 143647 96780843 ~ 96782021 (-) True G460331
TU521206 other downstream 461070 96460907 ~ 96464598 (-) False G460020
TU520966 other downstream 737685 96187468 ~ 96187983 (-) True G459813
TU520386 other downstream 1322741 95602423 ~ 95602927 (-) True G459323
TU522022 other upstream 83862 97028519 ~ 97030389 (-) True G460623
TU522159 other upstream 324084 97268741 ~ 97269031 (-) True G460720
TU522175 other upstream 333745 97278402 ~ 97280326 (-) True G460736
TU522501 other upstream 563452 97508109 ~ 97508631 (-) False G460985
TU522502 other upstream 563452 97508109 ~ 97508631 (-) True G460985

Expression Profile