RNA id: TU521969


Basic Information

Item Value
RNA id TU521969
length 1365
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G460586
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 96964345 ~ 96965775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTGATGGTGGACACGGAGCTGGTGATGGGGGTGTAGGTGTGTGTCCGGGGGTAAGGAGAAGAGGAAAAAGTAGGCAGGAAGTACTGGAAGTGCACTGGTACAGGCGGCCTGTTGTCACTCCTGGCCTCGATGGTGACAGGGTTAGGAGAGGAGCGGTTGCCAGAGATGGAGATCAAGTTGGTCCTCTCTACGGGATAGTCTGATTGGACACGGGGGGAGGTGTGGGCTATGGGCTGGTAGTCTGACTGGACATGGGGGGAGGTGTGGGCTATGGGCTGAGGTACCACTTTAGCTGTCGATACAACACAGGAAGGGGGAGATATGACACAACAGAATACACTTCAGCTGTTGATACAACACAGGAAGGGGGAGATATGACACAACAGAATACACTTCAGCTGTCGATACAACACAGGAAGGGGGAGATATGACACAACAGAATACACTTCAGCTGTTGATACAACACAGGAAGGGGGAGATATGACACAACAGAATACACTTCAGCTGTTGATACAACACAGGAAGGGGGAGATATGACACAACAGAATACACTTCAGCTGTTGATACAACACAGGAAGGGGGAGATATGACACAACAGAATACACTTCAGCTGTTGATACAACACAGGAAGGGGGAGATATGATACAACAGAATACACTTCAGCTGTTGATACAACACAGGAAGGGGGAGATATGACACAACAGAATACACTTCAGCTGTTGATACAACACAGGAAGGGGGAGATATGACACAACAGAATACAGATAGAAATATTCTTTAAAGGACATCcaaacataaaataaataatgaatgcAAAAAGCCCACTAGTGGGTTTGAATGTGTCTTGAGTATTTTTGTGCACTAGCTTTCAATGAATCTGAGTATTAAATaaaaagttgcttaggagctagtagcagagctgccatatcttAGGAGCTAgtagcagagctgccatatctgtcatgtcttaggagctagtagcagagctgccatatctgtcatATCTTAGGAGCTAgtagcagagctgccatatctgtcatATCTTAGGAGCTAgtagcagagctgccatatcttAGGAGCTAgtagcagagctgccatatctgtcatgtcttaggagctagaagcagagctgccatatctgtcatATCTTAGGAGCTAgtagcagagctgccatatctgtcatATCTTAGGAGCTAgtagcagagctgccatatctgtcacATCTTAGGAGCTAgtagcagagctgccatatctgtcacATCTTAGGAGCTAgtagcagagctgccatatctgtcacATCTTAGGAGCTAgtagcagagctgccatatctgtcatATCTTAGGAGCTAgtagcagagctgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU521962 lncRNA downstream 9399 96954557 ~ 96954946 (-) True G460581
TU521961 lncRNA downstream 11386 96952747 ~ 96952959 (-) True G460580
TU521960 lncRNA downstream 11815 96952317 ~ 96952530 (-) True G460579
TU521957 lncRNA downstream 15389 96948704 ~ 96948956 (-) True G460576
TU521943 lncRNA downstream 19688 96925668 ~ 96944657 (-) True G460564
TU521974 lncRNA upstream 487 96966262 ~ 96967674 (-) False G460587
TU521977 lncRNA upstream 1072 96966847 ~ 96969203 (-) False G460587
TU521978 lncRNA upstream 2143 96967918 ~ 96969203 (-) True G460587
TU521981 lncRNA upstream 3812 96969587 ~ 96969845 (-) True G460589
TU521983 lncRNA upstream 5264 96971039 ~ 96971604 (-) False G460590
trnap-cgg-2 mRNA downstream 123510 96840764 ~ 96840835 (-) True trnap-cgg-2
trnap-ugg-8 mRNA downstream 123772 96840502 ~ 96840573 (-) True trnap-ugg-8
XM_036978920.1 mRNA downstream 1007323 95931986 ~ 95957022 (-) True zgc:103559
XM_036978921.1 mRNA downstream 1007324 95931986 ~ 95957021 (-) False zgc:103559
XM_021604822.2 mRNA upstream 190273 97156048 ~ 97157070 (-) False LOC110524866
XM_036979088.1 mRNA upstream 195010 97160785 ~ 97161999 (-) True LOC118964738
XM_036978953.1 mRNA upstream 208192 97173967 ~ 97192535 (-) False LOC110524862
XM_036978954.1 mRNA upstream 208192 97173967 ~ 97192535 (-) True LOC110524862
XM_036978959.1 mRNA upstream 791596 97757371 ~ 97783785 (-) False si:dkey-66a8.7
TU521666 other downstream 135192 96824235 ~ 96829153 (-) False G460354
TU521633 other downstream 182324 96780843 ~ 96782021 (-) True G460331
TU521206 other downstream 499747 96460907 ~ 96464598 (-) False G460020
TU520966 other downstream 776362 96187468 ~ 96187983 (-) True G459813
TU520386 other downstream 1361418 95602423 ~ 95602927 (-) True G459323
TU522022 other upstream 62744 97028519 ~ 97030389 (-) True G460623
TU522159 other upstream 302966 97268741 ~ 97269031 (-) True G460720
TU522175 other upstream 312627 97278402 ~ 97280326 (-) True G460736
TU522501 other upstream 542334 97508109 ~ 97508631 (-) False G460985
TU522502 other upstream 542334 97508109 ~ 97508631 (-) True G460985

Expression Profile