RNA id: TU524643


Basic Information

Item Value
RNA id TU524643
length 448
lncRNA type intronic
GC content 0.37
exon number 3
gene id G462493
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 99381783 ~ 99382398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggttgtaatctgaatacagtgagaggttgtaatctgaataaaggagaGgttgtaatctgaataaagggagaggttgtaatctgaataaagggagaggttgtaatctgaatacagtgagaggttgtaatctgaataaaggagaggttgtaatctgaatacagtgagaggttgtaatctgaataaaggagaggttgtaatctgaatacagtgagaggttgtaatctgaatacagtgagaggttgtaatctgaatacagtgagaggttgtaatctgaatacagtgagaggttgtaatctgaatacagtgagaggttgtaatctgaataaagggagaggttgtaatctgaataaagggagaggttgtaatctgaatacagggagaggttgtaatctgaatacagggagaggttgtaatctgaatacagtgagaggttgtaatctgaataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524557 lncRNA upstream 3678 99374454 ~ 99378105 (+) True LOC110490602
TU524630 lncRNA upstream 25540 99354674 ~ 99356243 (+) True G462481
TU524623 lncRNA upstream 36376 99344451 ~ 99345407 (+) True G462476
TU524613 lncRNA upstream 52154 99328979 ~ 99329629 (+) True G462466
TU524612 lncRNA upstream 53140 99328401 ~ 99328643 (+) True G462465
TU524646 lncRNA downstream 2963 99385361 ~ 99385701 (+) True G462496
TU524660 lncRNA downstream 34474 99416872 ~ 99419061 (+) True G462509
TU524662 lncRNA downstream 35643 99418041 ~ 99419480 (+) True G462510
TU524666 lncRNA downstream 41222 99423620 ~ 99423968 (+) True G462514
TU524670 lncRNA downstream 47024 99429422 ~ 99486779 (+) True G462517
XR_005051595.1 mRNA upstream 173976 99196340 ~ 99207807 (+) False LOC110523045
XM_021604825.2 mRNA upstream 202961 99159906 ~ 99178822 (+) False LOC110524867
XM_021604823.2 mRNA upstream 202961 99159915 ~ 99178822 (+) True LOC110524867
XM_036978991.1 mRNA upstream 280713 99062220 ~ 99101070 (+) False LOC110523047
XR_005051933.1 mRNA downstream 763205 100145603 ~ 100157146 (+) True LOC118964709
XM_021604870.2 mRNA downstream 800529 100182927 ~ 100191165 (+) False si:ch211-121a2.4
XM_021604869.2 mRNA downstream 800537 100182935 ~ 100191165 (+) False si:ch211-121a2.4
XM_036979016.1 mRNA downstream 800551 100182949 ~ 100191165 (+) False si:ch211-121a2.4
XM_036979015.1 mRNA downstream 800567 100182965 ~ 100191165 (+) False si:ch211-121a2.4
TU524551 other upstream 3678 99374197 ~ 99378105 (+) False LOC110490602
TU524555 other upstream 3678 99374331 ~ 99378105 (+) False LOC110490602
TU524242 other upstream 322429 99058883 ~ 99059354 (+) True G462233
TU523975 other upstream 548872 98832457 ~ 98832911 (+) False G462037
TU523934 other upstream 602716 98774482 ~ 98779067 (+) True G461999
TU524704 other downstream 100985 99483383 ~ 99483960 (+) True G462549
TU525006 other downstream 684171 100066569 ~ 100086004 (+) False G462762
TU525518 other downstream 788739 100171137 ~ 100171897 (+) True G463119
TU525543 other downstream 844106 100226504 ~ 100230173 (+) False G463139
TU525578 other downstream 887163 100269561 ~ 100291594 (+) True G463164

Expression Profile