RNA id: TU524660


Basic Information

Item Value
RNA id TU524660
length 576
lncRNA type intronic
GC content 0.39
exon number 3
gene id G462509
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 99416872 ~ 99419061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatagggtagcatagtatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagcatagtatagggtagtatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagcatagtatagggtagtatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagcatagtatagggtagtgaggtatagggtagtatagggtagtgcagggcagtatagtatagtatagggtagtgtagtatTGGTTAGCGTAGTATAGGATAGGCTACATTGGGTAGTATaggatagtatagggtagtgtagtatagggtagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524646 lncRNA upstream 31171 99385361 ~ 99385701 (+) True G462496
TU524643 lncRNA upstream 34474 99381783 ~ 99382398 (+) True G462493
TU524557 lncRNA upstream 38767 99374454 ~ 99378105 (+) True LOC110490602
TU524630 lncRNA upstream 60629 99354674 ~ 99356243 (+) True G462481
TU524623 lncRNA upstream 71465 99344451 ~ 99345407 (+) True G462476
TU524666 lncRNA downstream 4559 99423620 ~ 99423968 (+) True G462514
TU524670 lncRNA downstream 10361 99429422 ~ 99486779 (+) True G462517
TU524713 lncRNA downstream 78453 99497514 ~ 99498131 (+) True G462557
TU524731 lncRNA downstream 99664 99518725 ~ 99521899 (+) True G462565
TU524733 lncRNA downstream 111814 99530875 ~ 99531089 (+) True G462567
XM_036978995.1 mRNA upstream 15314 99374155 ~ 99401558 (+) False LOC110490602
XM_036978996.1 mRNA upstream 15314 99374155 ~ 99401558 (+) False LOC110490602
XM_036978997.1 mRNA upstream 15314 99374155 ~ 99401558 (+) False LOC110490602
XM_036978998.1 mRNA upstream 15314 99374155 ~ 99401558 (+) False LOC110490602
XM_036978999.1 mRNA upstream 15314 99374155 ~ 99401558 (+) False LOC110490602
XR_005051933.1 mRNA downstream 726542 100145603 ~ 100157146 (+) True LOC118964709
XM_021604870.2 mRNA downstream 763866 100182927 ~ 100191165 (+) False si:ch211-121a2.4
XM_021604869.2 mRNA downstream 763874 100182935 ~ 100191165 (+) False si:ch211-121a2.4
XM_036979016.1 mRNA downstream 763888 100182949 ~ 100191165 (+) False si:ch211-121a2.4
XM_036979015.1 mRNA downstream 763904 100182965 ~ 100191165 (+) False si:ch211-121a2.4
TU524551 other upstream 38767 99374197 ~ 99378105 (+) False LOC110490602
TU524555 other upstream 38767 99374331 ~ 99378105 (+) False LOC110490602
TU524242 other upstream 357518 99058883 ~ 99059354 (+) True G462233
TU523975 other upstream 583961 98832457 ~ 98832911 (+) False G462037
TU523934 other upstream 637805 98774482 ~ 98779067 (+) True G461999
TU524704 other downstream 64322 99483383 ~ 99483960 (+) True G462549
TU525006 other downstream 647508 100066569 ~ 100086004 (+) False G462762
TU525518 other downstream 752076 100171137 ~ 100171897 (+) True G463119
TU525543 other downstream 807443 100226504 ~ 100230173 (+) False G463139
TU525578 other downstream 850500 100269561 ~ 100291594 (+) True G463164

Expression Profile