RNA id: TU524733



Basic Information


Item Value
RNA id TU524733
length 215
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G462567
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 99530875 ~ 99531089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGGAGCTCAGGGCAGTACCCCACAGCTGTGGAGTATGGACAATTCATTTTAAACTGTTCTCTTTTTTTCTTGTTTCAACTCTTCAATGCTGTCGGTAGATCACATAAACACATGTATTAGTGATCGCACATGGACTAGTTGAATAAATAGAATAAATGAATCCAGGGACTGGGGTTTAAAGTACCGGGAGGGTCAAGTGCACAGCAGTGAAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU524731 lncRNA upstream 8976 99518725 ~ 99521899 (+) True G462565
TU524713 lncRNA upstream 32744 99497514 ~ 99498131 (+) True G462557
TU524670 lncRNA upstream 44096 99429422 ~ 99486779 (+) True G462517
TU524666 lncRNA upstream 106907 99423620 ~ 99423968 (+) True G462514
TU524662 lncRNA upstream 111395 99418041 ~ 99419480 (+) True G462510
TU524942 lncRNA downstream 16743 99547832 ~ 99548040 (+) True G462724
TU524978 lncRNA downstream 59590 99590679 ~ 99590907 (+) True G462758
TU524981 lncRNA downstream 74943 99606032 ~ 99606531 (+) True G462761
TU525014 lncRNA downstream 86342 99617431 ~ 99651845 (+) False G462763
TU525040 lncRNA downstream 87166 99618255 ~ 99652911 (+) False G462763
XM_036979002.1 mRNA upstream 129317 99374155 ~ 99401558 (+) False LOC110490602
XR_005051933.1 mRNA downstream 614514 100145603 ~ 100157146 (+) True LOC118964709
XM_021604870.2 mRNA downstream 651838 100182927 ~ 100191165 (+) False si:ch211-121a2.4
XM_021604869.2 mRNA downstream 651846 100182935 ~ 100191165 (+) False si:ch211-121a2.4
XM_036979016.1 mRNA downstream 651860 100182949 ~ 100191165 (+) False si:ch211-121a2.4
XM_036979015.1 mRNA downstream 651876 100182965 ~ 100191165 (+) False si:ch211-121a2.4
TU524704 other upstream 46915 99483383 ~ 99483960 (+) True G462549
TU524551 other upstream 152770 99374197 ~ 99378105 (+) False LOC110490602
TU524555 other upstream 152770 99374331 ~ 99378105 (+) False LOC110490602
TU524242 other upstream 471521 99058883 ~ 99059354 (+) True G462233
TU523975 other upstream 697964 98832457 ~ 98832911 (+) False G462037
TU525006 other downstream 535480 100066569 ~ 100086004 (+) False G462762
TU525518 other downstream 640048 100171137 ~ 100171897 (+) True G463119
TU525543 other downstream 695415 100226504 ~ 100230173 (+) False G463139
TU525578 other downstream 738472 100269561 ~ 100291594 (+) True G463164
TU525706 other downstream 948532 100479621 ~ 100482754 (+) True G463269

Expression Profile