RNA id: TU525509



Basic Information


Item Value
RNA id TU525509
length 267
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G463114
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 100167346 ~ 100175459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TACCGGTAGTGGCGTGCCTGCGTTTCCAGAGAGTGACACATATGGTCAGCCACAGTTCCTCGGTCTGTATCCGAGCCTTGGTTAAAGTTCAATGTGGCAACACTGCGTCGAATTGTACCGAAGGTCACTTTACTTCCAATGCCAAACTCTGCAAAGATTTGCCCCACATACTCACACAGATTACCGTAAGGTTGACCGCAGGATGTGAAAAAGAAGAGTTCTATTTCTGAGGTCATTCCACTCAGATGAGGCCTGATTTGATGGAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU525503 lncRNA upstream 17692 100149214 ~ 100149654 (+) True G463109
TU525493 lncRNA upstream 24482 100135473 ~ 100142864 (+) True G463100
TU525000 lncRNA upstream 78297 100080477 ~ 100089049 (+) False G462762
TU525541 lncRNA downstream 48770 100224229 ~ 100225638 (+) True LOC110524906
TU525545 lncRNA downstream 51045 100226504 ~ 100227625 (+) False G463139
TU525548 lncRNA downstream 53801 100229260 ~ 100230232 (+) False G463139
TU525546 lncRNA downstream 54065 100229524 ~ 100230232 (+) True G463139
TU525556 lncRNA downstream 64234 100239693 ~ 100239918 (+) True G463146
XR_005051933.1 mRNA upstream 10200 100145603 ~ 100157146 (+) True LOC118964709
XM_036979002.1 mRNA upstream 765788 99374155 ~ 99401558 (+) False LOC110490602
XM_021604870.2 mRNA downstream 7468 100182927 ~ 100191165 (+) False si:ch211-121a2.4
XM_021604869.2 mRNA downstream 7476 100182935 ~ 100191165 (+) False si:ch211-121a2.4
XM_036979016.1 mRNA downstream 7490 100182949 ~ 100191165 (+) False si:ch211-121a2.4
XM_036979015.1 mRNA downstream 7506 100182965 ~ 100191165 (+) False si:ch211-121a2.4
XM_036979017.1 mRNA downstream 12557 100188016 ~ 100191165 (+) True si:ch211-121a2.4
TU525006 other upstream 81342 100066569 ~ 100086004 (+) False G462762
TU524704 other upstream 683386 99483383 ~ 99483960 (+) True G462549
TU524551 other upstream 789241 99374197 ~ 99378105 (+) False LOC110490602
TU524555 other upstream 789241 99374331 ~ 99378105 (+) False LOC110490602
TU524242 other upstream 1107992 99058883 ~ 99059354 (+) True G462233
TU525543 other downstream 51045 100226504 ~ 100230173 (+) False G463139
TU525578 other downstream 94102 100269561 ~ 100291594 (+) True G463164
TU525706 other downstream 304162 100479621 ~ 100482754 (+) True G463269

Expression Profile