RNA id: TU525593


Basic Information

Item Value
RNA id TU525593
length 349
lncRNA type intronic
GC content 0.50
exon number 2
gene id G463170
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 100287447 ~ 100288190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaaacagagacacaatgacacacacagagacacaatgacacaccgacacacacactcacacaacgacacacacacacaacacacacaacgacacacacacagagacacaacgacacacacacagagacacaacgacacagtgacaacgacacacacacaacgacacacacagagacacaacgacacacagagacacacacacagagacaacgccacacacagaaacacaacaacacacacagagacacaacgacacacagagacacgacacacacacacagagacacacacagtgacacaacgacacacgcacacagagacacaacgacacacagagacacaacgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU525557 lncRNA upstream 46437 100240788 ~ 100241010 (+) True G463147
TU525556 lncRNA upstream 47529 100239693 ~ 100239918 (+) True G463146
TU525548 lncRNA upstream 57215 100229260 ~ 100230232 (+) False G463139
TU525546 lncRNA upstream 57215 100229524 ~ 100230232 (+) True G463139
TU525545 lncRNA upstream 59822 100226504 ~ 100227625 (+) False G463139
TU525596 lncRNA downstream 10 100288200 ~ 100290254 (+) True G463172
TU525633 lncRNA downstream 49039 100337229 ~ 100345518 (+) True G463203
TU525726 lncRNA downstream 206489 100494679 ~ 100495496 (+) False G463277
TU525727 lncRNA downstream 206489 100494679 ~ 100495496 (+) False G463277
TU525728 lncRNA downstream 206489 100494679 ~ 100495496 (+) True G463277
XR_005051935.1 mRNA upstream 61099 100224211 ~ 100226348 (+) False LOC110524906
XM_021604869.2 mRNA upstream 96282 100182935 ~ 100191165 (+) False si:ch211-121a2.4
XM_036979025.1 mRNA downstream 132077 100420267 ~ 100449778 (+) False LOC110524909
XM_021604873.2 mRNA downstream 132157 100420347 ~ 100449778 (+) False LOC110524909
XM_036979026.1 mRNA downstream 132157 100420347 ~ 100449778 (+) True LOC110524909
XM_036979034.1 mRNA downstream 377957 100666147 ~ 100667320 (+) True LOC118964711
TU525543 other upstream 57274 100226504 ~ 100230173 (+) False G463139
TU525518 other upstream 115550 100171137 ~ 100171897 (+) True G463119
TU525006 other upstream 201443 100066569 ~ 100086004 (+) False G462762
TU524704 other upstream 803487 99483383 ~ 99483960 (+) True G462549
TU524555 other upstream 909342 99374331 ~ 99378105 (+) False LOC110490602
TU525706 other downstream 191431 100479621 ~ 100482754 (+) True G463269

Expression Profile