RNA id: TU525755


Basic Information

Item Value
RNA id TU525755
length 2623
lncRNA type antisense_over
GC content 0.58
exon number 2
gene id G463303
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 100532203 ~ 100534873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGAGGATCGGGACCTCTCGTGGACTGGGGCTGGTTTGGTCCTGTCATCTTTTCCAGGATCCAGGATGTTATCAGCAGAGTGGGAGCATCCTGAGCCTCTGGTCTCAGCTGCTTTCTTCTGGGTGTTCCAGGTGGTCTCGTACTCAGCAAAGGTCCCCAGTCTCTGCAGCTCCAGAAGGGCCTGCTGTCTGTTGTCCTGTCCCTGACACTCTCTCTGTTCCTTCCTGCTGCTGGACATGTCACAATCACCCCTGGCTATCTCTTTGCCCTCTCCACAGTCCTCAACAGGGCCTGGCAGGGCAGTTTTAGGGAGGGGTCTGGTGAAGGCAGGTCTGGGGGTGGAGCGTTGGTTCAGCAAGGAGTCTGCAGCCTCAGGGGGGGTcagctcctcctccacccccacctcaTTGATTTTGTCTGGCTCAGAGAAACACCGGACCTTCTTCTCCGTGGTGAAACGCTTCCTGCTTCCGATACGGGTCACCTGACTCTGGGCAGAGCCAGACCTGGCTGGGAGGCCCTCAGAGAGGCTGGACAGGGGGTTAGAGTTGTCACTCCTCCCCagaccagaggaggagtagtCCGGCAGGGACCCTGCCTCTGCCACAGGGTGCTCCAGAAGGACAGGCTCCAGGTCTCTCCTTCTAAAGGAGGTGACCTTCAGTACGCGGGCCTGCGCCTCCTTCAGATGGTCCTTATAGGTGGAGGTGAAGGAGCCATCTGAAGAAGAGGTGGTGTCTTTGGGCCTCCAGACCTCTGGCACCTCATGGTTCTCCTCCACCTCACAGGGTCCACTCAGGGAGGCAGCGCTCTTACTCTTCTGCAGCTGGGCACGTCTCATCTGGATCTCATTCCTCAGGGTGGTGGCGAACCGGTCAGTCCTGGTGCACTGGTTACTGGAGAGATCTACAGTCTCCACACTGGAACAGTCTCTGGGTACGAGGCCTGAGTTGCTGAGGCCGCTGGTGGTCTGAGGGCAGATCTGACTGTCTGGCAGCATCTCTTGACGGTGTATGGTGTCCTGCTGAAGAGGTTGTAGAGACTGTCTTCTCGGGGGGTAACTCATACAGTGGGGCTCTGCAGTCTGACTGTTGTTCCTCTTCAGGCTGGGCTGGCCTGTAGAGGACTCCAGTACAGCAGAGGGACAAACGGTAGCTGGCTGTTTGTGGCGGGAGCCGTCATCCTGTCTGCTGTATCCCTTACTGTCGTTGTTGAGGGGTGGAGGTGGCTGGTACTTAGCATTGGTAACCTCTGACCCCAGGGGAGTGAGTGACTTCTTATCTCCTCCACCCTGTACGATGCTCACTGCACTCCTCCTTTCACCGCCACCCTCCacaccctcctctctaccccctccacccctcctttcgTCAGTCTTGACCAGCAGGGCCTGGGTGACCGGTTGACCAGGCTGTCTGGCCGTCACACAGTAGTACCGGCTGTCTCCAGTGCTGTCTGGGGTCTGGCTGTAGAGCTGGGTGTTCTGGGCATTGTAGTTGGTGGGGAGCTCCTGCATGCTGCTGTAGCAGATGCTGACGTTCTGCTGTTTGGGGACAGACCAAGTCCTGGGGTGGGAGTAGAGAGAGCTCTCATTACTGTACTGTCTCTGGTGGCCGAGCAAGTAGGTAGGGGGGAGCTGGCCCAGCCTGACATCACTACTGGACAGGGAGCAAAGCTTGTTACAGTTCACCTGGTTGGGATGACAGTTCTTTGGTGAAATGTAAGGAGGGACCATGTTGTTCTTGGAGGGTAAGTTGTGATGGCTACGCCGAGAGTCATTGGTGCATTGTGAGTTATCAGAGTTATCCATTCCTTTACCATGTGCCTTGGGCTGGGTGTGAGCACCGGGTCCCTCTGGACAGGCTATAACCAGAACATTCTCATGGGACTTCGTAGCAGCGAAACTGTCACTGCGTACAGgcggtgatggaggaggagagggataggaggTCTTCTTCTTGTCAGGAACGTGCCAGACGGGACCGCAGCTAGCCCTAGCAGAGCTGGAGGAGTGGGAAGAACCTGACCCTGACTGCTCCGTTGTCCTGGGGCTGTCCCGGCCCATGATGGCCCCATGTCCCCCAGCCAGTTGCAGATACCCTGGCCTCTCGTCCTGCCTGACCCCCTCACTACTCAGGCTATGTCTGCCGTTACTGGGCTGGCCCCCTGACTCCCACTGGCTCACCTCATACAGCATGTTCTCTGTGGAGGCAGCATTGCTCTTAAGGAGGGTGTAGTCTGGTGTCTTAGGGAGGGTGTGGTCTGGTGTCTTAGGGAGGGTGTGGTCTGGTGTCTTAGGGAGGGTGTGGTCTGGTGTCTTAGGGAGGGTGTGGTCTGGTGTCTTGGAGAGGGTGTAGTCTGGTGTCTTGGAGAGGGTGTAGTCTGGGGTACCAGAGTTAGTGGAAAAGGAGCTGTATGCAGAGTCCCTCTTGCCCCCTCCCAGGTGTTCCGTGCTGGTGTTGGACTTGACCGGGGAGAAGCGTCCTGGGGATTGGTGTCCAGGGGGGTAGGGGTGGTGGGAGACATCTAGACTGTCCATGCTGCCCAGAGAGCTGAACTGGTCTGATACTCGCCGTAGGTTAGTCTGGTTCTGGTCCCAGCCAGACGAGGAGAGGTTGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU525741 lncRNA upstream 18965 100511631 ~ 100513238 (+) True G463289
TU525726 lncRNA upstream 36707 100494679 ~ 100495496 (+) False G463277
TU525727 lncRNA upstream 36707 100494679 ~ 100495496 (+) False G463277
TU525728 lncRNA upstream 36707 100494679 ~ 100495496 (+) True G463277
TU525633 lncRNA upstream 186685 100337229 ~ 100345518 (+) True G463203
TU525791 lncRNA downstream 54661 100589534 ~ 100589808 (+) True G463339
TU525796 lncRNA downstream 62730 100597603 ~ 100598706 (+) True G463344
TU525798 lncRNA downstream 65796 100600669 ~ 100608599 (+) True G463346
TU525802 lncRNA downstream 69414 100604287 ~ 100606696 (+) True G463348
TU525804 lncRNA downstream 76793 100611666 ~ 100612744 (+) True G463350
XM_036979025.1 mRNA upstream 82425 100420267 ~ 100449778 (+) False LOC110524909
XM_021604873.2 mRNA upstream 82425 100420347 ~ 100449778 (+) False LOC110524909
XM_036979026.1 mRNA upstream 82425 100420347 ~ 100449778 (+) True LOC110524909
XR_005051935.1 mRNA upstream 305855 100224211 ~ 100226348 (+) False LOC110524906
XM_036979017.1 mRNA upstream 341038 100188016 ~ 100191165 (+) True si:ch211-121a2.4
XM_036979034.1 mRNA downstream 131274 100666147 ~ 100667320 (+) True LOC118964711
TU525706 other upstream 49449 100479621 ~ 100482754 (+) True G463269
TU525578 other upstream 240609 100269561 ~ 100291594 (+) True G463164
TU525543 other upstream 302030 100226504 ~ 100230173 (+) False G463139
TU525518 other upstream 360306 100171137 ~ 100171897 (+) True G463119
TU525006 other upstream 446199 100066569 ~ 100086004 (+) False G462762

Expression Profile