RNA id: TU525796


Basic Information

Item Value
RNA id TU525796
length 1075
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G463344
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 100597603 ~ 100598706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcaggaattgtgaaaaacggagtataaatgtatttggctataaTGTATggaaacgtccgacttcaactgtaagttatCACACAGTGTTCCAGGACAACAGTCAGTTCACAGAACAGTTAAAACACATCCAGCTGaaaaggcagagacagtcacaagCTGCCGTGACTGAAGCAGAGACGATTGAGGTCTGTGCCTCATATGTTCAGTCCTTCTGTGTATTCTAGGACTGTAGATCAACACAGCAAATAAAACAGTAGGACTGTAGATCAACACAGCAGATAAAACAGTAGGACTGTAGATCAACACAGCAGATAAAACAGTAGGACTGTAGATCAACACAGCAGATAAAACAGTAGGACTGTAGATCAACACAGCAGATAAAACAGTAGGACTGTAGATCAACACAGCAGATAAAACAGTAGGACTGTAGATCAACACAGCAGATAAAACAGTAGGACTGTAGATCAACACAGCAAATAAAACAGCAGATAAAACAGTTGTTAACAGATCATAGCAGATAAAACAGTTGTTTACAACAAATCATAGAAGATCTGTCTCCGGTTGAATCCTATAAAGATCCAGGTAAAGTATTTCACTGGTCCCAGATCAGCAACAGGTTATAATCTGGAGGGTGAGGATTTCTTCAGAGCAGAGGTCCATTCTGAATGTTAGGTCACTGCCAAACAGAGATTTTGTGTCTGAAAATTACAGATTGACTGAAGGACCACAGAGATGGTCTCAAAGAACATCTACAACTTGTCTGTCTTTTTATGGATGCAACTTGTCCGAAAATAGTTGACTTGAGTTTAATTTACgacaagacaaaaacagacaCTATGATTTAATCCATATTTATGGGTCTTTGTGTGGCTGAAGCCTTATGGTTTAAATCGGCTGTCGGTCCTCCAGTCCAGCGGGGGCGCTGTGCTGTTAGATGGGGATAGAGACGATGGTCGGTAACTTCCCAATAGGAGGAGGGTTGTATTTCTCTATTCTCATTAGGCGACGTAGGACGTCATCTCTGTCCCTAGGCCAGCTGTAGACATGAGTGTTCTGGAGCCATGTAGGGACgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU525791 lncRNA upstream 7795 100589534 ~ 100589808 (+) True G463339
TU525755 lncRNA upstream 62730 100532203 ~ 100534873 (+) True G463303
TU525741 lncRNA upstream 84365 100511631 ~ 100513238 (+) True G463289
TU525726 lncRNA upstream 102107 100494679 ~ 100495496 (+) False G463277
TU525798 lncRNA downstream 1963 100600669 ~ 100608599 (+) True G463346
TU525802 lncRNA downstream 5581 100604287 ~ 100606696 (+) True G463348
TU525804 lncRNA downstream 12960 100611666 ~ 100612744 (+) True G463350
TU525865 lncRNA downstream 82589 100681295 ~ 100725850 (+) True G463394
TU525878 lncRNA downstream 95621 100694327 ~ 100698633 (+) True G463404
XM_036979025.1 mRNA upstream 147825 100420267 ~ 100449778 (+) False LOC110524909
XM_021604873.2 mRNA upstream 147825 100420347 ~ 100449778 (+) False LOC110524909
XM_036979026.1 mRNA upstream 147825 100420347 ~ 100449778 (+) True LOC110524909
XR_005051935.1 mRNA upstream 371255 100224211 ~ 100226348 (+) False LOC110524906
XM_036979017.1 mRNA upstream 406438 100188016 ~ 100191165 (+) True si:ch211-121a2.4
XM_036979034.1 mRNA downstream 67441 100666147 ~ 100667320 (+) True LOC118964711
TU525706 other upstream 114849 100479621 ~ 100482754 (+) True G463269
TU525578 other upstream 306009 100269561 ~ 100291594 (+) True G463164
TU525543 other upstream 367430 100226504 ~ 100230173 (+) False G463139
TU525518 other upstream 425706 100171137 ~ 100171897 (+) True G463119
TU525006 other upstream 511599 100066569 ~ 100086004 (+) False G462762

Expression Profile