RNA id: TU526347


Basic Information

Item Value
RNA id TU526347
length 1590
RNA type TUCP
GC content 0.46
exon number 5
gene id LOC118964799
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43896 ~ 52580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGCTACATTTAATGTTTCTGTTGACTGCTGAACATGTCTGCCTCAATGGTGGCGAGAGCGACAGTCAGAGCTGTCAGTAAAAGAAAGATATTAGCTACAAGAGCTGCTTTAACTCTGACTCCTCCTGCTGTGAATAGGATCCGGACCCTCCTGGAGAACAAGCCAGAATATATTGGTCTGAAGGTGGGTGTGAGGACACGGGGCTGTAACGGTATGACCTACACTCTGGACTTCACCAAGCAGAAGGATCAGGCTGATGAGGAGGTGCTGCAGGATGGTGTCCGTGTATTTATAGAGAAGAAGGCCCAGCTCACTCTGCTGGGGACAGAGATGGACTTTGTGGAGTCCAAGCTGTCCAGTGAGTTTGTCTTCAACAACCCCAATATCAAGGGCACCTGTGGCTGTGGAGAGAGCTTCAACATCTGACAGGGCTTCCTGCTGTGGAGAGGGCTTCAACATCTGACAGGGCTTCCTGCTGTGGAGAGAGCTTCAACATCTGAGAGGGCTTCAGCATCTGAGAGGGCTTCCTGCTGTGGAGAGGGCTTCAACATCTGAGAGGGCTTCCTGCTGTGGTggcctcccaacacacacacaccgcccaaccccgcctccttccctctctcacacagcccatctcttccctccctccctctctctcaattcaattcaagggctttattggcatgggaaacatgtgttaacattgccaaatcaagtgaggtagataatatataaagtgaatatgtaaagtgaaataaacaataaaaattaacagtaaacatcacacatacagaagtttcaaaacaataaagacattctctctctcacagcccgTCTCTTccccgcctccctccctctccctctctctctctctcacaacccATCTCTTCCCTAGCCAGAGGCCTGTGAGGTGAATAAAGAAGTGGAGAGCAGGACAGTAAAGCTGTGGGCCTTGAAGCATGGTGCAGTCCTTAGACCTTGTAGCTAAACACTGAGCAATAGACTTCCCCCTGAAGTCCTGTCTGCCCTCTTCTTAGACTAAagagcacatagacacaccaggGTTCTGACAGGCTATACTGTATCAGTACCCAGAAGACTTGGACAGCTAGGCTGAAAATACAGTAGACAGCAAAGGAAATGTTGGTTAGCCAATGGAACGCAGCACAGGAAATAGTTATCCATCCACATGATGGGGGGGGTGCAACATTTACACAACATTCTGATAGAAATGTGTTTTATAGAACATGTATGATTTGTCTTTCAATCATAGAAGAATATACAGTAGAGTAATGTCTGCTCTATTTGTTACATTTCTGTCTGCAACGCTGAGAACGTTTCACCTTACTGAATACACCCCTGGGGTTGAAGAGTTCCCGACCGACTGTTTTTGAAACTTGATTTTGCAGTTTGTAAATTATTTTAGTTTTACTtggttgtttttgtgtgtgtgtgtgtgtgtgtgaataagaATGTACAAAACCCTGTAAACTGTATAAACGCACAAAACCATATTCCTCACCCACAGGGGGTTCGTTCTGCTCCATGCCAGAACACGTGTTtgaaatgtatgtacagtgccttgcga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526302 lncRNA upstream 2279 23102 ~ 41646 (+) True G463671
TU526298 lncRNA upstream 2383 21201 ~ 41542 (+) False G463671
TU526356 lncRNA downstream 22835 73710 ~ 77877 (+) True LOC118964800
TU526380 lncRNA downstream 38053 88928 ~ 90024 (+) True G463724
TU526388 lncRNA downstream 52096 102971 ~ 103720 (+) True G463732
TU526449 lncRNA downstream 158491 209366 ~ 210014 (+) True G463786
TU526467 lncRNA downstream 192846 243721 ~ 243971 (+) True G463798
XM_036979169.1 mRNA downstream 5198 56073 ~ 75864 (+) False LOC118964800
XR_005051976.1 mRNA downstream 5198 56073 ~ 75864 (+) False LOC118964800
XM_036979178.1 mRNA downstream 391841 442716 ~ 549899 (+) False LOC110525138
XM_036979179.1 mRNA downstream 405745 456620 ~ 549899 (+) False LOC110525138
XR_005051978.1 mRNA downstream 492229 543104 ~ 545704 (+) False LOC118964801
TU526492 other downstream 214534 265409 ~ 268151 (+) False G463813
TU526495 other downstream 214534 265409 ~ 268151 (+) True G463813
TU526870 other downstream 405958 456833 ~ 459006 (+) True LOC110525138
TU527663 other downstream 1177830 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 2011453 2062328 ~ 2064067 (+) True G465203

Expression Profile