RNA id: TU526350


Basic Information

Item Value
RNA id TU526350
length 898
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC118964799
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 43896 ~ 52580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgTCTCTTccccgcctccctccctctccctctctctctctctcacaacccATCTCTTCCCTAGCCAGAGGCCTGTGAGGTGAATAAAGAAGTGGAGAGCAGGACAGTAAAGCTGTGGGCCTTGAAGCATGGTGCAGTCCTTAGACCTTGTAGCTAAACACTGAGCAATAGACTTCCCCCTGAAGTCCTGTCTGCCCTCTTCTTAGACTAAagagcacatagacacaccaggGTTCTGACAGGCTATACTGTATCAGTACCCAGAAGACTTGGACAGCTAGGCTGAAAATACAGTAGACAGCAAAGGAAATGTTGGTTAGCCAATGGAACGCAGCACAGGAAATAGTTATCCATCCACATGATGGGGGGGGTGCAACATTTACACAACATTCTGATAGAAATGTGTTTTATAGAACATGTATGATTTGTCTTTCAATCATAGAAGAATATACAGTAGAGTAATGTCTGCTCTATTTGTTACATTTCTGTCTGCAACGCTGAGAACGTTTCACCTTACTGAATACACCCCTGGGGTTGAAGAGTTCCCGACCGACTGTTTTTGAAACTTGATTTTGCAGTTTGTAAATTATTTTAGTTTTACTtggttgtttttgtgtgtgtgtgtgtgtgtgtgaataagaATGTACAAAACCCTGTAAACTGTATAAACGCACAAAACCATATTCCTCACCCACAGGGGGTTCGTTCTGCTCCATGCCAGAACACGTGTTtgaaatgtatgtaactagtgCAATACGTCTATGTACAGTTGGTGTGATGTGTCTCAACTAGAATAAATAGGAAATATAAAGTGTTTTGTCTTCTTTTAACCAGGTCAGTTGGCTgacaacacattctcatttacactAACAGCCtgggggaatagttacaggggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526302 lncRNA upstream 8473 23102 ~ 41646 (+) True G463671
TU526299 lncRNA upstream 8577 20723 ~ 41542 (+) False G463671
TU526356 lncRNA downstream 21130 73710 ~ 77877 (+) True LOC118964800
TU526380 lncRNA downstream 36348 88928 ~ 90024 (+) True G463724
TU526388 lncRNA downstream 50391 102971 ~ 103720 (+) True G463732
TU526449 lncRNA downstream 156786 209366 ~ 210014 (+) True G463786
TU526467 lncRNA downstream 191141 243721 ~ 243971 (+) True G463798
XM_036979167.1 mRNA upstream 1118 43896 ~ 49001 (+) False LOC118964799
XM_036979168.1 mRNA upstream 1292 43896 ~ 48827 (+) False LOC118964799
XM_036979169.1 mRNA downstream 3493 56073 ~ 75864 (+) False LOC118964800
XR_005051976.1 mRNA downstream 3493 56073 ~ 75864 (+) False LOC118964800
XM_036979178.1 mRNA downstream 390136 442716 ~ 549899 (+) False LOC110525138
XM_036979179.1 mRNA downstream 404040 456620 ~ 549899 (+) False LOC110525138
XR_005051978.1 mRNA downstream 490524 543104 ~ 545704 (+) False LOC118964801
TU526492 other downstream 212829 265409 ~ 268151 (+) False G463813
TU526495 other downstream 212829 265409 ~ 268151 (+) True G463813
TU526870 other downstream 404253 456833 ~ 459006 (+) True LOC110525138
TU527663 other downstream 1176125 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 2009748 2062328 ~ 2064067 (+) True G465203

Expression Profile