RNA id: XR_005051976.1


Basic Information

Item Value
RNA id XR_005051976.1
length 3332
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC118964800
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56073 ~ 77877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcttctctctaccccctcccctctcttctctctacccccttccccacccctctcttctctctacctctgaaGTCAGTGCTGTCTTTCTGTCCATTGCTGTGGCTTTGACAGAGTGCTTTGAACTGAGAGCTGATATTCTACAGATTGACCAGGGTGAAGGAGGACACGAGCGAACATTGACCGTCTCCTGTGTGAGATCTGAACTGGCCGTCGAGTGTCCTCAACATCTTGGTAGGAGTGAGCTAAAAGAGGAATACTCCGAACAGATTAGGGCAGCGGACTAGCTGCAGTACTTTTGCATAATGACAGACAGCCCTGTGGAGACCGGTCCCAGCAGCCTCCGTCCCCTGGCCGTAACGGACCTCTCAGGCTTACTGTGTAACCAGTCAGCCTCTCTGGAGGACCAGGATGTCCAGGGACCCCCGGTGCTGGTGGATGCCTGGCTGGTGCCCACCATGTTCAGCCTCATCATGCTGGTCGGCCTGGTGGGGAACTCTCTGGTCATCCACGTTATTACCAGGCACCAGCAGATGAGGACCGTCACCAACTTCTATATAGTGAACCTGGCCACCACAGACATAATGTTCCTGGTGTGTTGTGTTCCCTTCACCGCTACCCTGTACCCTCTGCCAAGCTGGGTGTTCGGAGATCTCATGTGTCGTCTGGTCAGCTACCTACAACAGgtgacAGCCCAGGCGACCTGTATCACTCTGTCTGCTATGAGTGTTGACCGTTGCTATGTGACCGTCTACCCTCTACAGTCCCTACGCCACCGCACCCCTCGCATGGCCGTGACGGTCTCTGTTTCCATCTGgatagGTTCTCTCCTGCTGTCAGTGCCTATAGCTCTGTATCAGCGTTTAGAAGAAGGCTGTTGGTTCGGTCCCCAGACCTACTGCAGCGAAGTGTTTCCTTCAGCCCGCCTCCAGAGAGCGTTTATCCTTTACAGCTTCCTGGCTGTCTACCTGTTACCTCTCGTCACCATCTGCTTCTGTTACGCCTTCATGATCAAACGCATGGGACAGCCCTCGGTACAGCCCACCGACAGCAACTACCAGGTAATAGCCCAAGCAGAACGTGGTGCAACAGTCAGGGCTCGTGTCTCtaggatggtggtggtgatggtggctcTGTTCACTGTGTGCTGGGGGCCCATCCAGATCTGCATCCTGCTCCAGGCCTTCGGACCACACCTGCGCTCCTACACACTCTACAAGGTGAAGATCTGGGCCCACTGCATGTCCTACTCCAACTCTTCTGTCAACCCTCTGGTCTACGCTTTCATGGGCAACAACTTCAGAAAGgcctttaaaaatgccttccCCTCTGTCTTCAGCCCGCAGGGCCaagggagaggggggggcagggggagggtgggggaggcagggagggaaggggggggggcagagtgcCAGGCCCCCAACGTGGacacagagatgcactttctttCATCTGGGACCTGAAGGCCAAACGTCTCATTATTTATTTACAGGTGCGTGTGTCTGTTAGCTAATGCCTGTCGTGATCTCTGAGACTGAGGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTAATATGTCCCAATGGGTCATGTGATTTCTGTAACTCATGTAATATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGCTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACAGGTCCCAATGGGTCATGTGATTTCTGTAACTCAGGTAATAGGTCCCAATGTGTCATGTGATTTATGTAACTCATGGTACATCTCCCAATGTGTCATGTGATTTCTGTAACTCATGTAATATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACAGGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACAGGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACAGGTCCCAATGTGTCATGTGATTTATGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACAGGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTTACTGATGTTACAGGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACAGGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACAGGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGGGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGTGTCATGTGATTTCTGTAACTCATGTTACATGTCCCAATGGGTCATGTGGTCTTTTATGTCtttgttcagtttttttttactgtCTGATATTCCTATTAATTATGTTAATATGTATTCCTATTCATTATATACATTTGATATATATTAATTATGTTAATCTTTATTTCAATTTATTATTATGTAAATGTTTTCTTCCAATTCATTATGTAGATTTTTATTTCTATATTTGGTCTCTCTAGTCTAGAacatagtagtagtgtagtactgtaatactctagtactgtagtactgtaatactctagtactgtaatactgtaatactctagtactgtactactgtagtactgtaatactatagtactgtaatactgtagtactataatactgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526350 lncRNA upstream 3493 50119 ~ 52580 (+) True LOC118964799
TU526302 lncRNA upstream 14427 23102 ~ 41646 (+) True G463671
TU526300 lncRNA upstream 14531 23102 ~ 41542 (+) False G463671
TU526301 lncRNA upstream 28683 23102 ~ 27390 (+) False G463671
TU526316 lncRNA upstream 30986 22638 ~ 25087 (+) True G463685
TU526380 lncRNA downstream 13064 88928 ~ 90024 (+) True G463724
TU526388 lncRNA downstream 27107 102971 ~ 103720 (+) True G463732
TU526449 lncRNA downstream 133502 209366 ~ 210014 (+) True G463786
TU526467 lncRNA downstream 167857 243721 ~ 243971 (+) True G463798
TU526478 lncRNA downstream 175537 251401 ~ 252259 (+) True G463805
XM_036979167.1 mRNA upstream 7072 43896 ~ 49001 (+) False LOC118964799
XM_036979168.1 mRNA upstream 7246 43896 ~ 48827 (+) False LOC118964799
XM_036979178.1 mRNA downstream 366852 442716 ~ 549899 (+) False LOC110525138
XM_036979179.1 mRNA downstream 380756 456620 ~ 549899 (+) False LOC110525138
XR_005051978.1 mRNA downstream 467240 543104 ~ 545704 (+) False LOC118964801
XR_005051979.1 mRNA downstream 467558 543422 ~ 545704 (+) True LOC118964801
XM_021605078.2 mRNA downstream 475917 551781 ~ 554254 (+) True LOC110525134
TU526346 other upstream 3583 43925 ~ 52490 (+) False LOC118964799
TU526492 other downstream 189545 265409 ~ 268151 (+) False G463813
TU526495 other downstream 189545 265409 ~ 268151 (+) True G463813
TU526870 other downstream 380969 456833 ~ 459006 (+) True LOC110525138
TU527663 other downstream 1152841 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1986464 2062328 ~ 2064067 (+) True G465203

Expression Profile