RNA id: XM_021605078.2


Basic Information

Item Value
RNA id XM_021605078.2
length 997
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110525134
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 551781 ~ 554254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTTTTCATTTTATCTTAAGTTCATGACGTCTTCTGTAGTTTTCATCCCCTCCCACCCCTGGTTCAGATCCCGTCAGgcggagacagagagggaccagGCAGGGGAGGATAATAGAATGTTCAAACAGGAGTTTGGAGAGAAGATAGACGCTCTACAGCTGGAGGTGGAACATCTCAGGAAACACAGGTCATGTTTGGAGCTGGagctgaggagagggaggggtagtgGTGGAGGTAGCCAGTATATAGAGCCTGTGTCTGGGGAGAAGTTGACCTCGGCCCCCCAGAGAGACCTGGAAGACATCCGGAAGGAACTGGAGGCAGTGAAGAAGGAGAATCATCAACTATGTGCTGTGGTAGATGACACGAGCGGTCCAGGGTCCAACATGTCAATGTCACAAAATGAGGATGAGCAGGAGGAGTCTTGTCTTGATCAGCCCTCAAACTGAAGGGTTTCACTGACCATGATGTCTGACATAATGACTTCCTCAAACTGAAGGGTTTCACTGACCATGATGTCTGACATAATGACTTCCTCAAACTGAAGGGTTTCACTGACCATGATGTCTGACATAATGACTTCCTCAAACTGAAGGGTTTCACTGACCATGatgtctgtcttcctctgacaTAATGACTTCCTCAAACTGAAGGGTTTCACTGACCATGATGTCTGACATAATGACTTCCTCAAACTGAAGGGTTTCACTGACCATGTCTCAATCTAGTTGACATGATCCTCCCCCTGAGCTCCTCTAATGTCTCAACTGGTTACTGAAAATAAGCTCTGCCTTAAAACAGAAGGATTTAACTCCTTCTATAGAGCCAGGGTGTTCTATGACAGCTGTCTGGCCAATGGGCTGCCCCTCCCCTCCGTCAACATATATGTGACTCCTGCCAACGCAGCAGTACACACCCAGCCCTGCCTGAGAGAGACACCAAACGTTcaaagcctggtcccagatctgtgcggggggggtggggggttggtAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526932 lncRNA upstream 17388 533938 ~ 534393 (+) True G464120
TU526902 lncRNA upstream 96691 454317 ~ 455090 (+) True G464092
TU526613 lncRNA upstream 112859 438576 ~ 438922 (+) True G463893
TU526614 lncRNA upstream 113460 437649 ~ 438321 (+) True G463894
TU526612 lncRNA upstream 114618 436884 ~ 437163 (+) True G463892
TU526869 lncRNA downstream 13396 567650 ~ 570254 (+) True G464067
TU526938 lncRNA downstream 39073 593327 ~ 599273 (+) True G464126
TU526945 lncRNA downstream 52143 606397 ~ 608103 (+) True G464132
TU526954 lncRNA downstream 60866 615120 ~ 615541 (+) True G464138
TU526973 lncRNA downstream 88634 642888 ~ 643281 (+) True G464154
XM_036979178.1 mRNA upstream 1882 442716 ~ 549899 (+) False LOC110525138
XM_036979179.1 mRNA upstream 1882 456620 ~ 549899 (+) False LOC110525138
XR_005051978.1 mRNA upstream 6077 543104 ~ 545704 (+) False LOC118964801
XR_005051979.1 mRNA upstream 6077 543422 ~ 545704 (+) True LOC118964801
XM_036979169.1 mRNA upstream 475917 56073 ~ 75864 (+) False LOC118964800
XR_005051981.1 mRNA downstream 910 555164 ~ 555893 (+) True LOC118964804
XM_036979181.1 mRNA downstream 10023 564277 ~ 602519 (+) True tars1
XM_036979187.1 mRNA downstream 221410 775664 ~ 1118589 (+) False slc4a4a
XM_036979183.1 mRNA downstream 304054 858308 ~ 1118589 (+) False slc4a4a
XM_036979185.1 mRNA downstream 304055 858309 ~ 1118589 (+) False slc4a4a
TU526870 other upstream 92775 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 283630 265409 ~ 268151 (+) False G463813
TU526495 other upstream 283630 265409 ~ 268151 (+) True G463813
TU526352 other upstream 499291 43925 ~ 52490 (+) False LOC118964799
TU527663 other downstream 674451 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1508074 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 1845507 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 1850865 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 2251129 2805383 ~ 2834110 (+) True LOC110525071

Expression Profile