RNA id: XM_036979181.1


Basic Information

Item Value
RNA id XM_036979181.1
length 2815
RNA type mRNA
GC content 0.50
exon number 18
gene id tars1
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 564277 ~ 602519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAAATCAGCAAGGATTGCATCAGTTATTGACGCAATATCCGGGACACGATCTTGCCGGTGAGCTGGCTGAACTGATTCACTTAACACCATTGAAACAATATATTTACGGGTATAGTATTCGTATAATGGCGGAAAAGAGCATGGCGGAGCAAATGAAGGAGTTGAAAGTTGACGACGGGAAAAAGGGAGGAGGAGCCaaagatggagagaagaagaagaagaaggctgCAGCGGGAGACGCTGGTGGGAAGACGGAGCTGTCCCCTCCTCCCGGGTACATGGAGGAGCGTCTGTCCCTGTACACTAAACTGAAGGAGGAGCATGATGCTCTGATGGCAGAGAGGGCAGAGAAGGACAGTAAATCCATCAAGGTGACTCTGCCAGATGGGAAGGTGGTGGAGGCTGAGTCCTGGAAGACCACACCCTACCAGGTGGCTGCTGGCATCAGTCAGGGTCTAGCTGACGCCACAGTGATAGCTAAGGTGAACAACTCTGTGTGGGACCTGGACCGACCTCTAGAGGAAAACTGCAGTCTACAGCTACTCAAGTTTGATGACGACGAGGCTAAAGCTGTGTACTGGCACTCCAGTGCCCACATAATGGGTGAGGCAATGGAGAGGGTCTACGGAGGCTGCTTGTGTTACGGTCCGCCCATCGAGAACGGCTTCTACTACGACATGTTCCTGGACCAAGAGGGGGTGTCCAGTAATGACTTCCCCTGCTTGGAGAACTTGTgtaagaagatcatcaaggagaaGCAGCCCTTCGAGAGGCTGGAGATCAAGAAGGAGACTCTCCTGGAGATGTTCAAGTACAACAAATTTAAGTGCCGGATCCTGAATGAGAAGGTGACCACCCCAACCACTACTGTGTACAGGTGTGGTCCGCTGATTGACCTGTGCCGAGGACCCCATGTCCGACACACTGGAAAGATCAAGGCCCTGAAGATCCACAAGAACTCCTCTACCTACTGGGAGGGCAAGGCTGACATGGAGACTCTTCAGAGGATCTACGGCATCTCCTTCCCTGATCCTAAGATGCTAAAGGAGTGGGAACGCTTCCAGGAGGAGGCCAAGAACAGGGACCACCGCAAACTGGGACGGGAACAGGATCTGTTCTTCTTCCATGATCTGTCTCCAGGCAGTTGCTTCTTCCTGCCTAAAGGATCCTACATCTACAACAGTCTGGTGGACTTTATCAGGtctgAGTACCGTAAGCGAGGCTTCCAGGAGGTGGTAACCCCCAACATCTATAACAGTAAGCTGTGGCAGACATCAGGCCACTGGCAGCACTACAGTGACAACATGTTCTCCTTCgaagtggagaaggaggtgtTCGCCCTCAAACCTATGAACTGCCCGGGACATTGTCTGATGTTTGACCACCGGCCGCGGTCCTGGAGGGAGCTGCCTCTGCGAATGGCTGACTTCGGCGTGCTGCATCGTAACGAGCTGTCTGGCGCTCTGACTGGGCTGACCCGTGTACGACGCTTCCAGCAGGACGATGCCCACATCTTCTGCACCATGGACCAGATTGAGGAGGAGATTAAGGGTTGTCTGGACTTCCTGCGTACAGTCTACGACTGTTTTGGTTTCTCCTTCAAACTCAACCTGTCCACCCGGCCTGAGAAGTTCCTGGGAGAGCCTGCGGTCTGGGATCAGGCTGAGAAGCAACTGGAGAACAGTCTGAATGAGTTTGGCGAGAAGTGGGTCCTCAACCCTGGAGACGGGGCCTTCTACGGACCGAAGATTGACATCCAGATCAAGGATGCTATTGGTCGATACCACCAGTGTGCCACCATCCAGCTGGACTTCCAGCTACCAATCCGCTTCAACCTCACCTTTGTCAGccatgATGGAGACGATAAGCAGAGGCCAGTCATCATCCACAGAGCCATCCTGGGATCAGTAGAGAGGATGATCGCTATCCTCACTGAGAACTACGGAGGGAAATGGCCGCTGTGGCTGTCTCCTCGTCAGGTGATGGTGGTACCTGTAGGACCCACACTGGATGACTATGCTCAGAAGATCCGTGATGATTTCCACCGTGGAGGTCTGATGACAGACATAGACTGTGATGCCAGCTGCACCCTGAACAAGAAGATACGCAACGCACAGCTGGCACAGTACAACTTCATCCTGGttgtgggagagaaggagaagaccaGCGAGACGGTGAACGTGCGTACGCGTGACAACAAGGTGCACGGAGAGCGCAGCGTCAATGAGTGTATGGAGCGTCTCAAACAGCTGAAGGCCTCACGCAGCCGCAACGCGGAGGAGGAATTCTGATTCCTCTGACGGTCCTTCAGTGAACCGCATCTCAGAGGATTTCAACTTTTCACTGGTTCAACTTCAAACACAAAGTGCACAACTTCCGAGTCCTTAGAGGGAGCGCACTCGCTCGGTCTTTTACTTCACTTGACTACGCATCTGTCCGCATTTCTTAAtaaactgttttttattttattttttgctttTTGAGATCACATTCTAATTCGTTGAACGTTTTGATAAAACAAAGCATAAATCACAACTCTTTCAATGGAACCTCCAATGTCCTCTCTTGTAATATGTGAAACTCATGATACTGTCTGATCTGTTGTGGAAATGTTACAAGGGATGACCTCTACTTTTAAATTGATTTATACCACTTTGCCTCTTTCTCCTCGTTGGTTTACGTTATAAAGGGAAACAAGAAAAAGACAGGTTTACTGCTGTCAACTGTAGGAATAACCGTTTTCATGACATCAAAGAATTGTAAATATGTAATGCAATTTTGAAaacgtaaaaaataaaatatttcttacatta

Function

GO:

id name namespace
GO:0006435 threonyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004829 threonine-tRNA ligase activity molecular_function

KEGG:

id description
K01868 TARS, thrS; threonyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526932 lncRNA upstream 29884 533938 ~ 534393 (+) True G464120
TU526902 lncRNA upstream 109187 454317 ~ 455090 (+) True G464092
TU526613 lncRNA upstream 125355 438576 ~ 438922 (+) True G463893
TU526614 lncRNA upstream 125956 437649 ~ 438321 (+) True G463894
TU526612 lncRNA upstream 127114 436884 ~ 437163 (+) True G463892
TU526945 lncRNA downstream 3878 606397 ~ 608103 (+) True G464132
TU526954 lncRNA downstream 12601 615120 ~ 615541 (+) True G464138
TU526973 lncRNA downstream 40369 642888 ~ 643281 (+) True G464154
TU526975 lncRNA downstream 41826 644345 ~ 644793 (+) True G464155
TU526978 lncRNA downstream 44004 646523 ~ 646809 (+) True G464157
XR_005051981.1 mRNA upstream 8384 555164 ~ 555893 (+) True LOC118964804
XM_021605078.2 mRNA upstream 10023 551781 ~ 554254 (+) True LOC110525134
XM_036979178.1 mRNA upstream 14378 442716 ~ 549899 (+) False LOC110525138
XM_036979187.1 mRNA downstream 173145 775664 ~ 1118589 (+) False slc4a4a
XM_036979183.1 mRNA downstream 255789 858308 ~ 1118589 (+) False slc4a4a
XM_036979185.1 mRNA downstream 255790 858309 ~ 1118589 (+) False slc4a4a
XM_036979186.1 mRNA downstream 255791 858310 ~ 1118589 (+) False slc4a4a
XM_036979188.1 mRNA downstream 255791 858310 ~ 1118589 (+) True slc4a4a
TU526870 other upstream 105271 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 296126 265409 ~ 268151 (+) False G463813
TU526495 other upstream 296126 265409 ~ 268151 (+) True G463813
TU526352 other upstream 511787 43925 ~ 52490 (+) False LOC118964799
TU527663 other downstream 626186 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1459809 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 1797242 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 1802600 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 2202864 2805383 ~ 2834110 (+) True LOC110525071

Expression Profile