RNA id: XM_036979186.1


Basic Information

Item Value
RNA id XM_036979186.1
length 10127
RNA type mRNA
GC content 0.47
exon number 24
gene id slc4a4a
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 775664 ~ 1118589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acactgtctctataaccctgtcactatatccctgtcactgtcactataaccctgtcaatataaccctaaccctgtcactatatcccaaaccctgtcactataaaccTAACCTTGTCCCGCCCCCCTAGCTGGATTACCCATATTAGAGTACCTGCCTAGTAGCTCTCCTACCCTGGATTACCCATTCTATCCTATCCTGGATTAGCTACGTCACTGTGTCACTATCTGCCTGATGGCTAACTATCTGCCGCTAGCCAGTTTACACTGGATACCGTCTGTTGGTAGCTAGCCTACACTGGATACTATTTACCTGGTAGCTAGCCTACATTGGATACTATTTACCTGGTAGCTAGCCTACACTTTATACCATCTGACAACGTAGCTAGACTACACTGTGTATTATCTGCAGGTAGCTAGCTGACACTAAATACTATCTGCTGGTAGTTAGCTTACACCATAACTTGCCTACACTGGATACCTTGAAGAACAGGAGCTTCATCAGCCTGGATCCTGCTGTAGCTAGCTGCCTTGCTGGCCAGGATCCTGGAGAGAGAAGACCACCTGTAGATGGGCCTGGTGGCAGAAGAGGAACTGTAGATGAGTGTTTAATGATTTAAGAATGAGTGGGTCCAGCACCACCCGGCTCAGCCCCAACACACTGCAGGTGAACGAGCCCAAGCGCTATGGCTCCACGTTGTCTCTGGAAGAGAAGTGTGAACAGTCTTTCTTCCTCTTCTACTATTACAGGATGGAGGACGAGGCCGTGCTGGACCGAGGCGCCTCCTTCCTCAAACACGTCTGTGATGAAGAGGAGGTAGAAGGTCACCACACCGTCTACATCGGAGTGCAGATGCCCAAGAGCTACCGGCGTCGGAGACGTCAACGCCGGAGAGGAAGCCACAAGGACAGGAAGGATCATCTGACGGAGAACGCCTCTGACAGGTCCGACACAGAAAACAACGATGAGGCCAGCAACAGCATCCTCAAACCGCTCAtctctccagcaGGCGAGAGGATCCGCATTATGCTGGGAGAGGATGATGATGGACCGTCACCACCTCAACTCTTCACTGAGCTGGATGAGCTGCTCTCTGTGGATGGGCAGGAGATGGAGTGGAAGGAGACAGCCAGGTGGATCAAGTTTGAGGAGAaggtggagaagggaggagagcgTTGGAGTAAACCCCACGTGGCCACGCTGTCGCTCCACAGCCTGATGGAGCTCCGGACTTGCATCGAGAAAGGAACCATCATGCTGGAACTGGAGGCCTTCACGCTGCCGCAGGTCGTTGAGTTGATCACAAACAGCCAGATAGAGAGCGGTCTGCTGAAGGCGGAGCTAAAGGACAAGGTGACGTACACGTTGCTACGGAAACATCGACACCAGACAAAGAAGTCCAACCTGCGCTCGCTAGCTGACATCGGCAAGACGGTCTCCAGTGCAAGCAGTCCAGCCACCACACATCGGAACCTGGCCTCAAGCAGCATGAACGACATCTCCGACAAACCAGAGAAAGACCAGCTGAAGAACAAGTTCATGAAGAAGCTTCCCCGAGACGCCGAGGCATCCAACGTTCTCGTTGGAGAGGTGGACTTCCTGGACGCCCCCTTTGTGGCATTTGTCCGTCTACAGCAGGCTGTGATGCTGGGAGCTCTTACAGAAGTCCCTGTCCCCACCAGATTCCTGTTCATCCTTTTAGGACCCAAAGGAAAAGCCAAGTCCTATCATGAGATAGGAAGAGCTATCGCCACCCTCATGTCAGATGAGGTGTTCCATGACATAGCATACAAGGCGAAGGACAGAGAGGATCTGCTGGCTGGCATCGATGAGTTTCTGGATGAGGTGATTGTTCTGCCCCCGGGGGAATGGGACCCGGCCATCAGGATAGAACCGCCCAAGTCTGTACCTTCTGCTGACAAAAGGAAGAACATGTATGCTGGAGGCGACAGCGGCCAGATGAACGGAAACACGCCCCatgatgggggaggagggggaggggggcatgCAGTGGGAGACGAGCTCAAGAAGACAGGCAGGTTTTGTGGAGGCCTCCTACTTGACATCAAAAGGAAAGCTCCATTCTTCGCCAGTGATTTCTACGATGTGTTCCACATCCAGGCACTGTCGGCCATCCTGTTCATCTACCTAGGAACCGTAACTAACGCCATCACCTTCGGAGGGTTGCTAGGAGACGCCACCGACAACATGCAGGGTGTGTTGGAGAGCTTCCTGGGCACGGCGGTATCTGGAGGGATCTTCTGTCTGCTGGCTGGCCAGCCTCTCACCATCCTCAGCAGCACTGGACCTGTTCTGGTCTTCGAGAGGCTGCTCTTCAACTTCAGCAAAGACAATGACTTTGACTACCTGGAGTTCCGGCTGTGGATTGGTCTGTGGTCTGCATTCTTTTGTCTGCTGCTGGTTGCTACTGACGCCAGCTACATGGTTCAGTACTTCACCCGATTCACAGAGGAGGGCTTCTCCTGCCTCATCTCCTTCATCTTCATCTATGATGCCTTCAAGAAGATGCTGAAGCTGGCTGACTACTACCCCATCAACTCGGACTACCAGATTGACTATGTCACCCAGTATGACTGTATGTGTATGGCCCCTACTATCTTAGAAAACAGTACCGAGGTGTTTGGAGATCCTCTGGATGCTGATAGCACTGCTGTCTGGTACTTCAACAACACTGATCTACCTCTGAATGCCACATGGTCGTCCCTGTCTAAGAAGGATTGTGTGAAGTATGGAGGAGAGCTGGTGGGGAAGGCATGTAAATATGTTCCTGACATCACTCTGATCTCCTTCATCCTTTTCCTGGGAACCTACACTACCTCCATGATGCTGAAGAAGTTCAAGACCAGTCCTTTCTTCCCTACATGGgtGAGGAAACTAATCAGTGACTTTGCCATTATCTTGGCCATCCTGATCTTTTGCGGTGTGGACATGCTAGTAGGAGTGGACACTCCCAAGCTCATAGTCCCAACTGAGTTCAAGCCAACGAGCCCCAACCGTGGCTGGTTTGTTCCCCCGTTCGGAGGCAATCCTTGGTGGGTGTACGTGGTGTCAGCGGTGCCTGCCCTGCTGGTCACAATCCTACTCTTCATGGACCAGCAGATAACCGCTGTCATCGTCAACAGGAAGGAGCACATGCTGAAGAAAGGCGCAGGCTACCACCTGGACCTGTTCTGGGTTGCAGTTCTGATGATTGTATGTTCCTTCATGGGGTTGCCATGGTACGTGGCGGCGacggtcatctcaatcgctcacATAGACAGTCtgaagatggagacagagacatcCGCCCCTGGAGAAATGCCCAAGTTCTTGGGAGTGAGGGAGCAGAGAgtcactggtgtgtgtgtattcattctGACGGggctgtctgtctttatgtctccCATCCTCAAGTTCATCCCCATGCCAGTGCTGTATGGAGTGTTCCTCTACATGGGCGTGGCCTCTCTTAATGGAGTGCAGttCATGGACCGTCTCCAGCTGCTCCTGATGCCAGCTAAGCACCAGCCTGACCTTGTGTACCTGCGCCATGTTCCTCTGAGGAAGGTCCACCTGTTTACCTTCATCCAGATCCTGTGTCTGGCACTGCTCTGGGTCCTCAAGTCCACCGTGGCCGCGATTATCTTCCCTGTCATGATCCTGGCCCTGGTGGCGGTGAGGAAGACAATGGACTACATGTTCTCTCAACACGAGCTGAGCTTCCTGGATGATGTCATCCCTGAGAAGgacaagaagaagaaggaggacgctaagcagaagaagaagatgaggagCATTGACAGTGACATAGATGATGAGATAAATCCTCATCATTCCTGGATCGACACTCATCGTGCTGAGCAGCTGCTCTTCTACCAGGCCAACTGTCAGTCAAGTCCAGAGATGAGTCCACTCAACGTGCCTCAGATTAGAATTGAGATGGACCCTGATGACAACGGTTACCGCTGGAAGAGCCGAGGGTCTGAAACCTCTCTGTAGCCCCTACTTCTCAACAGCCCCAAGACCCTCGTCCATGCCCCAAGACCCTCGTCCACGCCCTAAGACCCTAGTCCACGCCTCAAGACCCTCCTCGATGCCCTGGGACCCTACTCCAGGACCCAAGACCCTCGTCCATGCCCCGATACCCTCCTCCTTGCCCCGAGACCCTCCTCCATGCACCAAGACCCTACTCCATGCCCCAAGACCCTCCTCCATGGCCCAAGACCCTCCTCCATGCCCCGAGACCCTCCTCCATGCCCGAGACCCTCCTCCATGCTCCTCCATGCCCCGAGATCCTCCTCCAAGCACCGAGACCCTCCTCCATGCCATGACACCCTCCTCCATGCCCCGAGACCCTCCTCCATGCCCCAAGACCCTCCTCCATGCCCCAAGACCCTCCTCCATGGCCCAAGACCCTCCTCCATGCCCCGAGACCCTCCTCCATGCCCCGAGACACTCCTCCATGCTCCTCCATGCCCCGAGACCCTCCTCCATGCCCCGACACCATCCTCCATGCCCCGACACCCTCCTCGATGCCCCGAGACCCTTCTCCATGCACCAAGACCCTCCTCCATGCTCCGACACCCTCCTCCATGCCCCGAGACCCTTCTCCATGCCCCAAGACCCTCCTCCATGCCCTGGGACCCTCCTCCATGCCCCAAGACCCTCCCCCATGCCCCAAGACCCTCCTCCATGCCCCAAGACCCTCCTCCATGCCCTGGGACCCTACTCCATGCACAAAGACTATCCTCCATGCACCAAGACCCTCCTTCATGCCCTGGGACCCTCCTCCATGCCCCAAGACCCTCCTCCATGCGCTGGGACCCTCCTCCATGTCCCGAGACACTCCTCCATGCCCTGGGACCCTCCTCCATGCACCAAGACCCTCCTCCATGCCCCAAGACCCTGCTCCATGCCCCGGGACCCTACTCCATGCACCAAGACTATCCTCCATGCCCCAAGACCCTCCTCCATGCCCCAAGACCCTCCTCCATGCCCAGAGACTATCCTCCATGCGCCAAGACCCTCCTCCATGCACCAAGACCCTCCTCCATGCCCCAAGACCCTCCTCCATGCCCCGAGACCCTCCTCCATGCCCCGAGACCCTCCTCCATGCCCCGAGACCCTCCTCCATGCCCCAAGACCCTCCTCCATGCCCCAAGAGCCTCCTCACACAAACACTCAACACCAACAATACTCACACTTGAAATGTTTTAAACAATTATTATTTGCTTTATGTTTTCCAAAAGCCAATAATGAAAACTAGTGATTATCTGAAACTTGACTTGGTCAATCGAGGAGTTGAGCCGCCCAGGGATCAACCAATAGGAAGAGGACAACATGGTTTCATCGCTAAATCCTAACCAATAGGAAGAGGAGAACATTGTTTCATCACTAGGTCTTTCAGTTTTCACAGCTACTACTGTAGGTTCATCTGTCTTCCTTATTCTGAAGTGTCTGACACATCTAACCCCtttctgctgttctactgttctatgGTTCTACAGTTCTTATACTGTTGTATGGTTCTTTGGTTCTACTGTTCTATGGTCCTACTGTTCTACGGCTCTATGgttctgctgttctactgttcttcTGTTCTACGTTTCTGTTGTTCTTTGTAATTCATCCACAGTTGTGTTCTCATTATTAGAGAAGCATGTAGAACCCATTCTGCTCTTTTTTTATATGTAGTTCTTCGTCTCAATTATTAGAAGTAGAAAAGGAATTGCGGAAAAGAATAGTTTGATTGGTTCTGTAGCTCTACATCTTATTTTAGCTGCCAGACGGTGTGAGTTCATTTCTCTAGATGGACACAGCATGGAATATAGTTAATATGTCTTCTGTTCTTTTACGTCTTGTAAAATATATTCAAGAGATTAAATATAATATAACATCAGAGAAATACATGTgacatagaaatataatataattattgcAATATAAGTTCATTCACTTTTAACCTCTGTTTGGTATTTTGTTTGTCTAGATGCAGATTTTATATCACTTTTTCCCACTGGAGTTGTGATTGCAACACTTTACTGTTAACTGTAATGACACACGGATACTGCAGCACTCAGTGAGACTTCATTTCAATGTCCTATTTCATTGGTCAGACTTAAGGCTGCTCTGCAACATGTCAGATCCAACCAAACTGAAGCTATTCTTCCTCTATTTTGAACAATTATTATTTTGTACTTGTATTAAATATCCATGTTTGATAAGGGGAAGAGGTTTCAGACTCCAGTCTTCCCAATGTAACCTGCACGTCGTACTAATAACTGGTCTACTCCAGACTCCAGTCTTCCCAATGTAACCTGCACGTCGTACTAATAACTGGTCTACTCCAGACTCCAGTCTTCCCAATGTAACCTGCACGTCGTACTAATAACTGGTCTACTCCAGACTCCAGTCTTCCCAATGTAACCTGCACGTCGTACTAATAACTGGTCTACTCCAGACTCCAGTCTTCCCAATGTAACCTGCACGTCGTACTAATAACTGGTCTACTCCAGACTCCAGTCTTCCCAATGTAACCTGCACGTCGTACTAATAACTGGTCTACTCCAGACTCCAGTCTTCCCAATGTAACCTGCATGTCAGACTAAGACCTCCATCCCAAAGTCTGAAGGTCATACCATCTGACCACAGAACATTGGCCTCCATTTTCTTTCAATTTCCTGAGAGTTCTACATGTGGAATTGTCAGAGTTAGTGGATACCCAGCATGTGATCTATTGTTCATGGCTGACATTTGTTATGGTGTGCCCTGTCCTTTACAGAGAGAGTTTGGACAGCGGTTCAGCTGACATAGTGATGCTGTTTCTGAACACCACCCATTCATAATGATGGCTGTTTTATCTAATAGCATCATAATGTTGACTGATTGTTTAAAtgactgtctggctgactgactaaccGACTGTGTACATAACCGTTTGACTGACTGTCTAAATTACTATCTGACTGGCTAAATGACTGTTTaaaggactgactgactgtctaaattactgtctgactgacttACGGACGGACTATCTAAATATTTGTCTGACTGATGGACGGACTGTCTAAatgattgtctgactgactgtttaAAGTACTATCTGACTGTCTAAATGACTGTTTaaaggactgactgactgtctaaataactgtctgactgactgtctaaataactgtctgactgtctaaATGATTGTCTGATTGACGGACAGactgtctaaatgactgtctgACTCactgtctaaatgactgtctgactgactgcctgTCTTTATTGTGTTCCTTGTCCTTTGCAGAGGATGTTTAGACAGCGGTTCAGGGGACACAGTGATGCTGTTTCTGAACGCAACCCATTGATAATGATGGTTGTTTATCTAATAGCATCATAATGTTGACTGACTGTCTAAATAACTgtccgactgactgactgtctaaattaatgtctgactgactgacggacggaCTGTCTAaattactgactgactgtctaaaTGACTCTCCGACTGACTGTCTAAATGACTCTCCAACTGACTGTCTAAATTactctctgactgactgtctaaattactctctgactgactgtctaaATTACTGtctgattgactgactgtctgactctaAATGACTCTGACTGACTAACtaaatgactgactggctgtctaaatgactgtctaACCGACTGACTGTCTAAATTACTTTCTGACTGACTGTTtgactgtctggctgtctggctgactgtctaaatgactgtctaACCGACTGACTGTCTAAATTACTTTCTGACTGACTGTTtgactgtctggctgactgtctaAATGACTGTGCACGTTCGAGCGGTTCACTTTTATCAAGTTTTCGTtagtcagtcagacagtaattTAGAAAGATCCTGCAGCCATCACATGCATTGAGGGTGGGtctattgtcaaccaatcattagggtgTTTTTGTTTCACCCACGCCAACGTGACAAAGGAcgtgactgaaacaggaaccaactttTCCACGATTCATGTATAAAGTgtatatttaagtgataatgcctgagAAGTCGATGCTTGGATGGGTGTTGTTAACGTGCcaaaatatcctccaaacaccggcttcaaggccattatcacttttatataaCAGGTTACCAACACATTCATATAATGATTGACATTTTAattaaaaactttattttgatgaatttatttatACCTTCATCCTTCCATGAGATAAAGTCCAGACGCAAATCtaaggttgctacccaagccgtcTGGTCGTTCGTTCTTTCgtttcggttgccagagacgcgacccaatCGTTGAGTCTTTATGTTCTGTATGtttttgttctaaatgttccactgccatactggctggaaacgttcttatcccttgcttgctagctaaccaaatacAGCTAACTCACAGTTATGTCAAACAGTACAGCCAGAATAACATCAAAGTAGCTGCAATTACGTTTGTTTAAGCTATttttagtgacatttatttggatacatccattgCAATGAACTAATGGTGAGCTATTTCGCCTGgaatagaaaatgtgctctctcgtcaagacactgttgttcagagtagcttcaaagactgcaaactagctgcttTTCGTTTCGttttacctgttttctattgacatttctcagtatatatccataaaatgatgccagctgattcatgactgagaaaagctgcctgcctgcctgtctgtctcgtcctgaCTCCCGACACGTTCAATACTATGGGACATCTGGAGATTGAATTTaacattgaaacaatgttgcaaatttcagagtgacagacagcaaggtttatacaaatctccactgttgaaatCTAAATGTCAGTCTAAAAGACATgagagataatgtctagatgctttttatactggagatcaagtttataaattgccggctgggctgatgagacagtggatggcgcagtcagatggaacagagtaaataggcgtTTTAACGTCCTAGCGTTGGCCgctggtaacttgtggaatagacaacGTCTagaatgtggttttaaccaatcagcatccaggattagaaCCACCTGTTGTATAAGTACAATTGTATATATTTCGGGCTCGCTTTCACCAATTGATAGCACAATGTAAACACATATATTtacagtttgtgagtgtgtgatatgggGGTTGGAGAAATGTTTATCTCAACATTATAAAGAGCAACTTTTataaacaatggcaacactgccatgttgtacTGAGCTTTGCTGTCCTAAAACTACATCCGTGTCTGACTCCAACTTCACTCCTCAACTTTCGTCTACAGTCGGTTGCTTTCACCTTACCACAAACGAGCCCactttctgactgactgactgactgtctgactggctgtctgactggctgacactgtctgtctgtctgtttgtctgtctgactTCACTGCTCAAGCTCACTCTGTATCCAGTCAGTCTTGACCAGTGAGTCTGGCCCCATATTCggaaagcatctcagagtaggagtgctgatctaggatcagttccttCCAGTGTACGTTATCCTATTAATTATGATGGACAAACCGATTAGATTAGTAGTCCTACTGTGAGATCCATTCCAGTGTATGTTATCCTATTAATTATGATggacaaactgatcctagatcagtagtCCTACTCTGAGATCCTTTATGAATACGGTCCAGGTTTCTCCTCTATATATCTGTACATACATAACCGCATGTTGGACCACCAAGATGCAATAGGTAAACTTTTATCTTTGTCAATGTGTTCATTTGTTTCTTTCAAGATATCTGTAGATCAACACGTAACAGTatgctacatactgtattttcAGAATCACTGTTTTAACCATAGTCAGTGGAAATGAGTGTCACTTATGTCTGGGACATATTATGGAGGAAGTTAGTTCAACTTGATTGAAGTACATTAAGCATGATTCTAAAACATGTAACatgcaaaaaagtgttaaattaaaAAGTTAATTTTAGTTTGTTCCATACTAACCATTTTTAATTGAATTTTGTGATTTTTAGGACAAAACCGGTGAAATTACTAATTTTAGAATTTATATTTTTCAAATGAAATGCatattaaaaataaactgaatttATCAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526880 lncRNA upstream 25379 830927 ~ 832931 (+) True G464071
TU527031 lncRNA upstream 56127 801968 ~ 802183 (+) True G464205
TU527005 lncRNA upstream 127344 726605 ~ 730966 (+) True G464179
TU527003 lncRNA upstream 132642 718217 ~ 725668 (+) True G464178
TU526978 lncRNA upstream 211501 646523 ~ 646809 (+) True G464157
TU527228 lncRNA downstream 61611 1180200 ~ 1180815 (+) True G464368
TU527657 lncRNA downstream 82310 1200899 ~ 1201218 (+) True G464699
TU527660 lncRNA downstream 107777 1226366 ~ 1226831 (+) True G464702
TU527673 lncRNA downstream 129306 1247895 ~ 1248126 (+) True G464715
TU527697 lncRNA downstream 159095 1277684 ~ 1278043 (+) True G464739
XM_036979181.1 mRNA upstream 255791 564277 ~ 602519 (+) True tars1
XR_005051981.1 mRNA upstream 302417 555164 ~ 555893 (+) True LOC118964804
XM_021605078.2 mRNA upstream 304056 551781 ~ 554254 (+) True LOC110525134
XR_005051978.1 mRNA upstream 312606 543104 ~ 545704 (+) False LOC118964801
XM_036979195.1 mRNA downstream 883499 2002088 ~ 2105141 (+) False LOC110525062
XM_036979196.1 mRNA downstream 883499 2002088 ~ 2105141 (+) True LOC110525062
XM_036979198.1 mRNA downstream 1030651 2149240 ~ 2199894 (+) False LOC110525063
XM_036979197.1 mRNA downstream 1031243 2149832 ~ 2199894 (+) False LOC110525063
XM_036979199.1 mRNA downstream 1043960 2162549 ~ 2199894 (+) True LOC110525063
TU526870 other upstream 399304 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 590159 265409 ~ 268151 (+) False G463813
TU526495 other upstream 590159 265409 ~ 268151 (+) True G463813
TU526352 other upstream 805820 43925 ~ 52490 (+) False LOC118964799
TU527663 other downstream 110116 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 943739 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 1281172 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 1286530 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 1686794 2805383 ~ 2834110 (+) True LOC110525071

Expression Profile