RNA id: XM_036979195.1


Basic Information

Item Value
RNA id XM_036979195.1
length 2917
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC110525062
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 2002088 ~ 2105141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTAGGTCGTCAGTAGACCCTGCCCTCCGTATATCACTGTATTGACGTGTTGTTAGCAAATGGGAGCAGAAGGGCCGATCCTTCGCCTGGAGAGGTCATTCTGACTACAGGGCTGATCCTTCGCCTGGAGAGGTCATTCTGACTACAGGGCTGATCCTTTGCCTGGAGAGGTCATTCTGATTACAGTTGCCACTTCTTGCCAAAATCTTCAGGGTTTAAAGACTCGATCACTGCGACCACATTTATACACATCATTCTGTTTTCTCCAATCGAGACACGGATCCCGATGTTCAATCAGGATTCCGGAATACTTCCACATCTAACATTGAAAGGAGATACTTCGTGAACTGTTTGATATTTCGGTCTGATCTGACTACAGAAGCATGGTTGATGACACCAGTTTAGCAACTAAATCTGCTTTGCAAGCAGCTTTCTCCTCGACCTGCAACCTCCCCCTGCTCGTCTCCTCTGCCTCGACACACAGCCACTTCCCCGGTTCACACTCACAGTCCGACCAGCCCAACGGCGGAGGCATGAAGCTAGAGGCGGTCATGGAAAGCCTCCAAAGACAGCAGGCTGCCCGCCTGGCGCTAGAAGAGAAGCTCCGTCAGGCGGAGAAAGAGAAAGACCTCCGCTCCATGGTCGAGTCCCAGATCCATCAACAAGCCCTCGCCTTCCGCCACTACCAGGCAGCGGTCCGTGGCGCTTTCGCTGCGGGAATAGCGAACTCTTCTCTCGGGTTGGCGAGCTCCGCTGAACGGGAACTGGCTCTCCCTCACAGTCTTGACGCTCGCAGGCATTCGGCCAAAGCCGACTCCGATATGGACGATGATCCAGAGGGCATGGACCGAGGTATAAATGATGACAACAGGGATATGGATGGAGATGGCATGGACAACGAGGGAATCGTGGACGATGAGGAGGACATGGAGGGGGCTCTCAGCCACTACCATCCCCGCCACCCCATGCACCCCGGGGCGGGAGACTCGCCAAAGGACACACTTGTACATCTCAAGTCCAGAGCCCCTCCGTCTTTCGCTGCGCCCCGGCAGTCAGAGACCCCGGGCGGGATGGCACCACAGTCTCAGCAACACGAATGGACTTACGACGAGCAATTCAAACAGTCAGGACAAAGCAGTTCGCCAGAGAGGAAGCTGGGAAATTCAAGTGTCGGTATCGGTGGCGTCTCCTCGTCGCTGATTCAGGAGTTGTACGAGTTGGACGATGAGGTCAAGAGGAAAGAGTTTCTTGATGACCTCTTCAGTTTTATGCAGAAGAGAGGGACTCCAGTGAATCGTATTCCTATCATGGCCAAGCAGGTGTTGGATCTGTACACGCTCTACAAGCTGGTCACAGAAAAAGGCGGCTTAGTGGAGGTCATCAATAAGAAAATATGGCGTGAGATCACCAAAGGCCTCaacctccctacctccatcacCAGTGCAGCGTTCACCCTGCGAACACAGTATATGAAGTACCTCTACCCTTACGAATGTGAAAAGAGGGGTCTGAGCTCCCCCGGAGAGCTCCAGGTAGCTATCGACAGCAACCGCCGTGAGGGACGTCGTCAGAGCTACGGGTCGTCCATCTTTAACTACTCTCCAGTAGggactccctccaccctctcctcccccaagATGAGCATGTCTCACCTGGCCATGTCCACCTACAACGGAGTACACCTGACCCAGGGACACAACATCAAGAAAGAGGATGGCCTGATGTCGGGAGGTCTGCCGGGCCGTGTTGGGGAGATGTCTTTGGGAGGGCACCACGGGGCGGCTGCAGCGTTGGAGCCGCCGGAGAGCGGGGAGCCGCCGGAGAGCGGGGAGCCGCCGGAGAAGAAGAGGATGTCGATGGATCAACAGAGGCTCATGCAGCATGCGCTGCAGCAGAACCTCCTCGCCATGGCAACGCAGCTGCCCATCAAGTTAAACAACggagatgagaggatgagagATGACAGACAAGAGACTCCATTGAACCTGTCTACCAGCGGCATTAGCAGCATCAACGTGTCAATAGAAATAGATGGAGTTGTCTACACAGgtGTTCTGTTTGCCAAGAAGCCCTCCCTTCCCATGATGCTGGGTGGTCACCAGATCCAGAACCACACCTCCTCTCTGGGAAAGATCAGTCTGGGGCTGAACTCCTCCTGCGTACAGATCCATCCgtcctgctgctcctcctcctcctccacgtcCTCCACATCCTCGGTCCACAGACCCGGAAACCTCTCCCCCTGATCTGAGTCCCACCCACAGCCCCACCAACTCACTCTAAACCCCGCCCCTATCCTCCCCCAAAGACAGCACACGGTCTGAGATACCAGGATGAAAGACTTCTGTTGtttttcccccctcctcctccctttttCTCGATTTCCCTTATCCcagttaaaataataataaacacatATTTACAGAGGAAATACTTCCGTAGGAAAAGAACAAGAAAAGGCTCtccttctattctctctcctccgaACTCTGAATAGCAATGGTATGCTGAGGACCTCTGAACCCAATGGTATGTAGAGAACCTCTGAACCCAATGGTATGCTGAGGACCTCTGAACCCAATGGTATGTAGAGAACCTCTGAACCCAATGGTATGTAGAGGACCTCTGAACCCAATGGTATGCTGAGGACCTCTGATCTCAATGGTATGCTGAGGACCTCCGATCCCAATGGTATGCTGAGGACCTCTGAACCCAATGGTATGTAGATGACCTCTGATCCCAATGGTATGCAGAGGACCTCTGAACCCAATGGTATGCAGAGGACCTATGAACCTAATGGTATGTAGAGGACCTCTGAACCCAATGGTATGTAGAGGACCTCTGAACCCAATGGTATGTAGAGGACCTATGAACCTAATGGTATGTAGAGGACCTATGAACCTAATGGTATGTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU528236 lncRNA upstream 40615 1959270 ~ 1961473 (+) False G465145
TU528230 lncRNA upstream 40615 1961023 ~ 1961473 (+) False G465145
TU528237 lncRNA upstream 40615 1961023 ~ 1961473 (+) False G465145
TU528240 lncRNA upstream 40615 1961023 ~ 1961473 (+) True G465145
TU528198 lncRNA upstream 77268 1923713 ~ 1924820 (+) True G465119
TU528342 lncRNA downstream 8749 2113890 ~ 2116021 (+) True G465222
TU528368 lncRNA downstream 69782 2174923 ~ 2175439 (+) True G465248
TU528384 lncRNA downstream 92602 2197743 ~ 2198832 (+) True G465261
TU528224 lncRNA downstream 97230 2202371 ~ 2202933 (+) False G465141
TU528225 lncRNA downstream 97538 2202679 ~ 2203051 (+) True G465141
XM_036979187.1 mRNA upstream 883499 775664 ~ 1118589 (+) False slc4a4a
XM_036979183.1 mRNA upstream 883499 858308 ~ 1118589 (+) False slc4a4a
XM_036979185.1 mRNA upstream 883499 858309 ~ 1118589 (+) False slc4a4a
XM_036979186.1 mRNA upstream 883499 858310 ~ 1118589 (+) False slc4a4a
XM_036979188.1 mRNA upstream 883499 858310 ~ 1118589 (+) True slc4a4a
XM_036979198.1 mRNA downstream 44099 2149240 ~ 2199894 (+) False LOC110525063
XM_036979197.1 mRNA downstream 44691 2149832 ~ 2199894 (+) False LOC110525063
XM_036979199.1 mRNA downstream 57408 2162549 ~ 2199894 (+) True LOC110525063
XM_036979208.1 mRNA downstream 253481 2358622 ~ 2401200 (+) False zfr
XM_036979200.1 mRNA downstream 253481 2358622 ~ 2409261 (+) False zfr
TU527663 other upstream 772989 1228705 ~ 1229099 (+) True G464705
TU526870 other upstream 1543082 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 1733937 265409 ~ 268151 (+) False G463813
TU526495 other upstream 1733937 265409 ~ 268151 (+) True G463813
TU526352 other upstream 1949598 43925 ~ 52490 (+) False LOC118964799
TU528467 other downstream 294620 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 299978 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 700242 2805383 ~ 2834110 (+) True LOC110525071
TU528784 other downstream 873701 2978842 ~ 2982425 (+) True G465578
TU530344 other downstream 1667723 3772864 ~ 3773340 (+) True G466813

Expression Profile