RNA id: XM_036979198.1


Basic Information

Item Value
RNA id XM_036979198.1
length 2179
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110525063
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 2149240 ~ 2199894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGGCTGCTGTCGTTCACTTTGGAACACTCGGCAAGATTCTAGTACAGAATATGTTTAGTGGGGTGTCTAAAAGCAAAATGAATCAAACATGTGGATCTGTATAATGTTCAGTTGGCCTATTCATGTGCCGTATGCTTAAAGGTAAATTGATCAGAAGCCGGACTTGGTTCTCGGTCCGGTGTGTGAATACGCCGCGGCGCCGGTGGTAAGGATGGCATCTCACTGGAACATCCCGGTAATATCGACAGGTGCTCTGGCCAGCGGTTTTAGTGACAAGGAGAAAGAATACTCTCACCTGACCCGAATCTCCCCGTCTTACCTGAAAATGGCAGAAACATTCTCGGCGATGTTCCGTCACTTCAACTGGAAAGACGCGCTGCTGATCTTCGATGACGACAAAGAGGAGAGAAATTGTTACTTCACTCTGGAAGGGGTGCACCTCAAACTCATGGAGGAATATCAGACCGTACACATAGCGATCAACACTAAAGAAGAGGGCCTGAACGCAGATGACATCATCAACTACATCTACGAGAGTGAagTTGTTATCATGTGTGCGGGAGCAGACGTTGTCCGAGACATCATGCTAGCGGTTCACAGAAGGAGGCTCACCAACGGCAGCTACATCTTCTTCAACATCGAACTCTTCAACTCCTCGTCCTACGGCAACGGCTCGTGGAAGCGAGGGGATAGGTACGACAGTGAGGCGCGACAGGCGTACTCTGCCCTCAACACGGTCACGCTGCTCCGGACGGTCAAACCAGAGTTTGACAACTTCTCCCTGGAGGTCAAGAGATCAATTCAGAAGGCTGGACTACCGGACTGTGACGACTGTGACAATATCAACATGTTCGTGGAAGGGTTCCATGATGCATTGCTGCTGTACGCCCTGGCGCTGCACGAAGCCATCAGGAACGGCCTCACCAAGAAGGACGGAGCAGAGATCACCTATCGCATGTGGAACAGAACATTtgaagGCATCGCAGGTCAGGTGTCTATGGACTTCAACGGGGACAGATACGGAGACTTCTCTGTGATGAGCATGACCAACACAGAGGCAGGCACCTATGAGACGGTGTGTAACTACTTTGGTGTGAACGAGAGTTTCCAGATGCTTCCGGTGTTCAACCCTGAACTCTTCACACTGAAAGGACGGCACAGAGTGCACCACACAGACCTGCCAGACAAATCATGTGGACTAGGAGTATCTGCTGTTACTGGGATCATAGTGGGAGCTCTGCTGGGGACTGCACTGCTCATAGCCTTCTACTTCATCAGGAAGAACTACACTATAACCATTGAGAGACGCGCCGCCAGGGATGAACATGACATCGGGAAACATCGTCAGTTACGAGAAGATTCTGTCAGATCTACCTTCTCGGCGGCGTAGAGCATCACTGAGTTCGTCTGTGGCTCCTGACGTTTCCGTTCCCTTCCAAGCATCATGGGAATGTGACCAAAGACTCGACTGCTGTCAGAGTACTCATGCTATTTAAAGAAAGACATCATGtcattgttttgtgtttttaattGTTTGGTGTTTTAACGTTTTGGAATTTCATTTTTCTCAGGAAAGTTAGCCGTCACAAAGCACCACTTGCATCTCGTCTCTGTAGAAGGATATAGGTGTGTATTCTCCCCTTAAGAGGGCCAGCACGGCAGCATTTATAGTCTGTGCAAATTGCTTTTAGTAATTATCAAGACCTTAGTAGTATAACACTGCGTAGTTGTTAATGTACAGGATCGTGGGTGTGAATGTATTCAGATAATGGACGCTCTTGTGTCATGAGACTTTGAAAATGTTTTGGCCTGTTTGTCAGAAAAAAACATTTGCTCTCCACCCTGCTGTGTTTTAGTCAAACCTGAGAGGACTGGTATTGGTCAGATCAGAGGTAactagaataacagtgaagacatcaaaactatgaaataacacatatggaatcatgaagtaaacaaaaaagtgttaaacaaatctaaatatattttatatttgagatgcttcaaagtatccgccctttgccttgatgacagctttgcacactcttctctcaaccagcttcacctggaaatcTTTTCCAGCATGCGAGTTCCCACATATCCTGggcacatgttggctgcttttccttcactctgcggtccaactcatcccaaaccatctcaattgggttgaggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU528342 lncRNA upstream 33219 2113890 ~ 2116021 (+) True G465222
TU528310 lncRNA upstream 88987 2059971 ~ 2060253 (+) False G465202
TU528311 lncRNA upstream 88987 2059971 ~ 2060253 (+) False G465202
TU528312 lncRNA upstream 88987 2059971 ~ 2060253 (+) False G465202
TU528314 lncRNA upstream 88987 2059971 ~ 2060253 (+) False G465202
TU528224 lncRNA downstream 2477 2202371 ~ 2202933 (+) False G465141
TU528225 lncRNA downstream 2785 2202679 ~ 2203051 (+) True G465141
TU528386 lncRNA downstream 6107 2206001 ~ 2206458 (+) True G465263
TU528389 lncRNA downstream 10179 2210073 ~ 2210280 (+) True G465266
TU528401 lncRNA downstream 27322 2227216 ~ 2227430 (+) True G465277
XM_036979195.1 mRNA upstream 44099 2002088 ~ 2105141 (+) False LOC110525062
XM_036979196.1 mRNA upstream 44099 2002088 ~ 2105141 (+) True LOC110525062
XM_036979187.1 mRNA upstream 1030651 775664 ~ 1118589 (+) False slc4a4a
XM_036979208.1 mRNA downstream 158728 2358622 ~ 2401200 (+) False zfr
XM_036979200.1 mRNA downstream 158728 2358622 ~ 2409261 (+) False zfr
XM_036979201.1 mRNA downstream 158728 2358622 ~ 2409261 (+) False zfr
XM_036979202.1 mRNA downstream 158728 2358622 ~ 2409261 (+) False zfr
XM_036979203.1 mRNA downstream 158728 2358622 ~ 2409261 (+) False zfr
TU528322 other upstream 85173 2062328 ~ 2064067 (+) True G465203
TU527663 other upstream 920141 1228705 ~ 1229099 (+) True G464705
TU526870 other upstream 1690234 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 1881089 265409 ~ 268151 (+) False G463813
TU526495 other upstream 1881089 265409 ~ 268151 (+) True G463813
TU528467 other downstream 199867 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 205225 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 605489 2805383 ~ 2834110 (+) True LOC110525071
TU528784 other downstream 778948 2978842 ~ 2982425 (+) True G465578
TU530344 other downstream 1572970 3772864 ~ 3773340 (+) True G466813

Expression Profile