RNA id: TCONS_00031894


Basic Information

Item Value
RNA id TCONS_00031894
length 2471
RNA type mRNA
GC content 0.47
exon number 16
gene id XLOC_016164
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8663108 ~ 8688759 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACGTGAGCTCACAGCCAGACACACGCAGTTGTTGTACTCTGGTAGAGGACATATGCTGTGTTCCCGAAAAAAGGGGATCAATgttGTATTAACGACATTATAAGAATGGGCTGTTGTTGAGAAATTGTGGCATCATGAATGAAGATGTGCTCAGAAGCTCACACTTGCCAATAAAGCTGGCAGCTTTGCACTTTCTGGACCTTCCACTGTCGGTCTATTACTCCCTTCCACAGGTGAGTCTGAGCACCGGCACCAAGAAGCTTTTTGCCGCTACCGCCTTCGGTGCCGTCTCCCTCATCATCATCGCACGACGCTTCAGGAGGAGAAAAGGCAGGAGGAAAGCCAATTCTCCAGTAGAACAGGAAACATTTGAGTTCCTCACCACCATCCACCTGAGTAAAGAGAGTGACAGTCAAAGTGTGCCTCAGAACTCAGAGAACCCCTACACGTGTAATGTGGTGTCCGGGGCCCTGTACAACAAGCTTTCAGGCTCACTGCCAAGTCTGGTTTCTGTGAGGAGCAGGCACTCCTCTAGCAGCTCTACGTGTGCTAATGGTTCCAATTGTTGGGAAGAAGCAGGAGACGCCGCTGACGTCTGTAACCTGCTCAGCCTCCCTGTCGCCACCCCAGAGAATCTCTACCTGATGGGAATGGAGTTGTTCGAGGAAGCCTTGCGGCGATGGGAGCAGGCATTAACGTTCCGCAGCAGACAAGCAGAAGACGAGGGTAGCTGCGTATCCGTGAAGCTCGGAGCTGGAGACGCCATTGCAGAGGAAAGCATGGAGGACATTATCAGTGCAGATTTCATCCAAAAGCTGGAGTCTCTGCTACAAAGAGCCTATCGCCTCCAGGAGGAGTTTGAAGGATCGCTGGGAGTGACAGACCCTACTACACATCCTACTAATGTTCTTCTGGCAGACAAGCACATGGATCTTTCCGTGCGGGAGGAATTGGAGGACACCTGTCTCAGAGATTCAATCAGCATCGCCTCGACAGATTCCTTCGTGTCTGCTGCAGAGTTATCTGAGCACAGAGAGATGAGGAGTGGTCATGCGCTGGGGTCACTGTGTCCTCACCCCTTCTATGAGGATGCCCTGCAGATGGCTGAAGAGGGGAAGATCTCCTGTCGAGTGCTACGAACAGAAATGCTTGAATGTCTTGGAGACGCCGATTTCCTGGCGAAGCTGCACTGTGTACGGCAGGCATGTCAGGTCATCTTGTGTGAAAGGGCAACTAGAGCATTTCTGGCTGACACAGGGAAGAGGATATTGTCTGCAATAATTGCTAGAGCTAGAAAGAGTCCAAAGAGATTCGAAGAGGTGTTCGAAGAAATGATCTCCTTTTTGGAGCATACCGACCACTGGGAGAACACAGAAAATGAGCTTTCCTCAAGAGGGGTTAAACATATGAACTTCTATGATGTTGTTCTTGACTTCATCCTTATGGACTCATTCGAGGATCTAGAGAATCCACCTTTATCGATCCAAACTGTGGTCAACAATCGCTGGCTCAGCAACTCCTTCAAAGAGACGGCAGTTGCATCAAGTTGTTGGTCTGTTCTGAAGCAGAAGAGACAGCATATAAAGGTCCAAGATGGCTTTATTGCACATTTCTATGCAGTGTGTGAGCACATAAGTCCTGTCTTGGCCTGGGGGTTTCTAGGCCCTAAATGTACTCTGCAAGATTTCTGCTGCTTCTTCAAGGAGCAGGTGTTGTTCTTCCTTAAGGACATCTTTGACCTCGACAAAGTACGTTATTTTAGTCTGGAGACACTGGCTGAAGACATCCTACACCTGCTTCACAGACGATCTGATCTGCTTATGGCCTATCTGGCAACAGATGTGATCCATCACCTGAACGGCTGTAGTGACACCTCGGTGCATCTGGTACACAGTGCTTTGCTGGAAGCACAAGTTCAGTGACTACATACGTCTGTCAGTCATTCACTCACTGCCTACAGCTGCTGAATCTAGTCCTCATCACGACTCGTCTTCCAAGAGTCACTATTAGTGCCATGTACTGTTTGTATGTTCAAAATTAAGTGGTTAAGAAAGGACAGATGTCTATTTAATATGCCTTTCAGTGTTCTTTTATCCAAGTTTCTGTTTTGACTTGAGGAATGATTTGCACAATGAATGGTCTAATCTTTTAGGGTTCTCCATGTTTTGAAACCTAAAAGTTGTAACCATATTGGAGAgtattttaatgtgtttgaaAAGGGATGAAGAAACTTAGTCTCCCAAAAAAGGTAGGGGGTTAGGGGTTATGGAAATTAATATTTCAACACTGCCCATGAATTGTTTAGATATTCAAGTCATGTAAAGCTAAGGCCATGCAACAggcattttaaaaattgtgttcTGTAATAAGCTTTTGGAGATGACACTTGTTCATAACTCACCTGTTACGCCAGTACAAAAAATGTATCGTTTAAAGCAACACGATGTGGACAATAAAAACTTAAGCCAT

Function

GO:

id name namespace
GO:0008053 mitochondrial fusion biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-193 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in mitochondrial fusion. Predicted to be integral component of plasma membrane. Orthologous to human MIGA1 (mitoguardin 1).

Ensembl:

ensembl_id ENSDART00000010257

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033772 lncRNA downstream 168392 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00033773 lncRNA downstream 168392 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00031885 lncRNA downstream 168392 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00031884 lncRNA downstream 168397 8491044 ~ 8494711 (-) False XLOC_016159
TCONS_00031883 lncRNA downstream 168969 8491405 ~ 8494139 (-) True XLOC_016159
TCONS_00033774 lncRNA upstream 147163 8835922 ~ 8840884 (-) True XLOC_016165
TCONS_00033775 lncRNA upstream 641487 9330246 ~ 9419088 (-) True XLOC_016168
TCONS_00033351 lncRNA upstream 1057678 9746437 ~ 9747547 (-) False XLOC_016178
TCONS_00031912 lncRNA upstream 1057678 9746437 ~ 9748047 (-) False XLOC_016178
TCONS_00033350 lncRNA upstream 1057678 9746437 ~ 9748084 (-) False XLOC_016178
TCONS_00031893 mRNA downstream 14668 8644422 ~ 8648440 (-) True XLOC_016163
TCONS_00031890 mRNA downstream 26933 8617816 ~ 8636175 (-) False XLOC_016161
TCONS_00031891 mRNA downstream 31303 8617819 ~ 8631805 (-) True XLOC_016161
TCONS_00031889 mRNA downstream 51433 8586953 ~ 8611675 (-) True XLOC_016160
TCONS_00031888 mRNA downstream 53455 8586415 ~ 8609653 (-) False XLOC_016160
TCONS_00031896 mRNA upstream 157081 8845840 ~ 9059955 (-) True XLOC_016166
TCONS_00031897 mRNA upstream 472188 9160947 ~ 9259283 (-) False XLOC_016167
TCONS_00031898 mRNA upstream 472188 9160947 ~ 9260002 (-) True XLOC_016167
TCONS_00031899 mRNA upstream 641387 9330146 ~ 9489611 (-) False XLOC_016168
TCONS_00031901 mRNA upstream 824401 9513160 ~ 9527210 (-) False XLOC_016170
TCONS_00031892 other downstream 27976 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031853 other downstream 1754427 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 1896701 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 2617713 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 3102089 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031900 other upstream 717799 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 840729 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 999296 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031914 other upstream 1058099 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031915 other upstream 1058543 9747302 ~ 9747431 (-) True XLOC_016178

Expression Profile

Expression of TCONS_00031894 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.
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Expression of TCONS_00031894 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_02422051_02446833.mRNA True 2143 mRNA 0.48 16 CI01000003 2422051 ~ 2446837 (+)