RNA id: XM_021605116.2


Basic Information

Item Value
RNA id XM_021605116.2
length 2418
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110525169
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 4643954 ~ 4650871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATGAGAAACTTGACGCAAGTTCATACATTCACTCTGCTGCTACCGGTTTTCAGGCACATACGAAACACTGCCGCCGGCTTTTCATTGACACTTGGTTCATTGGACAGGCTCACTGAAAAACACCAACTGTGAACCTTCCAGTTATTATCTGAACAACTAACGCGCGTTACATTCTTTTTTTTTAGAAGAAATGAAAAATAGCACTCttttgttgtggaatttcttACTTTGTGCAGTTGCTTTCTTTGTGTCGGGAGCGGACGAAAACACAATTTTCAAAGatgaGGAGTTTAAAGTGCCGCGTGGCGAGGATGAGACGGTCCATGACCTTATCACATACAACATGAGGAAGAGTCTGGATCTAGACGTGGACGGCTGCATCCTGGTGCCTGGTGAGAAGAGGAGTCTGCTGGAATGTGGATTCAACGTCACAGCCAAGACCATCTTCATCATCCACGGCTGGACGaTGAGCGGGATGTTTGAGAGTTGGATGCGAAAGCTGGTGGCGGCCATGATGGAGCGAGAGCCAGAGGCCAACGTGGTCATCGTTGAATGGCTGCCCATGGCCCACCAGCTCTACCCTGACGCTGTCAACCACACCTACCAAGTCGGCCTCAGCGTCGCCACCACCATCAACTGGCTCCAGGAGGAACAGCAGATGCCCTTGCAGAATGTGCACCTGATTGGCTACAGCTTGGGGGCCCATGTGGCGGGCTACGCTGGCACGTTTGTGCGAGGGAGCGTCGGCCGAATCACAGGTCTAGACCCGGCAGGGCCCATGTTTGAGGGGGTGGGGGATGAGAAGCGCCTCTCTTCGGACGACGCTGACTTCGTAGATGTCCTGCATACGTACACTCGCGAGGCTCTGGGAGTGAGCATAGGCATTCAGCAACCAATCGGAGACATCGACATCTATCCCAACGGAGGAGACGTGCAGCCGGGCTGTGACCTGACCAGCGTGCTGACCAGCGCCTCCGGAGGAAACTTCATGGATGTGATGAAGTGTGAGCACGAGCGAGCCGTACACCTGTTTGTGGACTCTCTGCTTAGCAAGGAACACACGAGCTTCGCCTACCAGTGCACAGACCCTGAACGCTTCAAGAAGGGCATCTGCCTGAGCTGTCGTAAGAACCGTTGCAACCAGATGGGTTACAACGCCAAGAAGACGAGGAAGAGGCGCAACAGCAAGATGTACCTGAAGACCCGCGCCGACACACCCTTCGGAGGGATCCATTATCAGATGAAGATGCATGTGTTCAACAGGAAGCAGGCTGACAATGCTGACCCGACCTTCTACGTGAAACTGTATGGCGCTCACAACGACAGCCAAGACTTGCATGTAGACATtcCTAACAAAGTGGGTTTGAACCTGACCAACACCTTCCTGGTCTTCACCGAGGATGACATTGGGGACCTGCTGAAGATCCGTCTGAGCTGGGAGGGGGCGTCTGAGTCCTTCGGGTCCTTCTGGAAAAGCATTAAGAAGAACTTCTGGGACTGGAAGAGCAGCAGCAAGCCCACCAACCAGGTGTTGGAGGTCCGTAGGATCCGTGTCAAGTGTGGAGAAACTCAGAAGAAGTTCACGTTCTGTGCCCAGGACCCCTCGTTGACTGAGATCACTCCAGGACAGGGGATCACGTACGTCAAGTGTCGCGATGGCTGGGAGGTAAAACCCAGTAACAAAAGATTACACATATAAGGATTCAGGACTTCAACGATCAATACACTGTCACCATGGGAACCCGACGGAGGGAAGAAAGAACCGGCACCTCTTCGTCTGAGCTGCTGGATGGTTTCCGTTGGTTACTGATGCTCGCATGACTCCGGTCTCTGTCAAATGGGGCGACGGGAGGCATGTGCTGTGTGGGAGGGGTTTGGGGCGGTCCTTAATTGTACTGTCTGTCAGGACTGTCTTGACGATCCTTAGTGTTTGTTTGTGCAGACTGGCAGTCAACTCGGATTAGGAAAATGGTGTTAAAATGTGTTATCGGACATTCCCCAACAAACCTAGTCtctttactgtatatatattttttattaatttatgaaGAATGGAAGCACTGCAAGACCGAGCTTTATTTATCAACCCCCAAGTACAGCCTGTACTGACGCACATTTACATTAGTTGTTTAATAGTTGTGAGTTGCAGTATTTGTCTGCTTGTGTTTTGAGTGTATGTCTTTTTGTTATTTGTGTGGTATGACCgtggtgtgtgtgagcgtgctcTTTTGGGTAGAGCGAGCCGACTGAGATTAACGTGACTACACTGTATCACTGAAGGAGGTGACTGGCTGCATTCACATGATCTTTCACTGCATTGTGACTTCTGTGTACCATAGTAGTTTGTGTATATAATGTAACTaacatattgtttttttttttttcctaaaTAAATTAAAATTCACTTATTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU531332 lncRNA upstream 11822 4631562 ~ 4632132 (+) True G467643
TU530931 lncRNA upstream 33080 4609864 ~ 4610874 (+) True G467294
TU530930 lncRNA upstream 40556 4602572 ~ 4603398 (+) True G467293
TU530819 lncRNA upstream 46595 4587908 ~ 4597359 (+) False G467221
TU530822 lncRNA upstream 46711 4587908 ~ 4597243 (+) False G467221
TU531400 lncRNA downstream 29818 4680689 ~ 4680895 (+) True G467700
TU531405 lncRNA downstream 39572 4690443 ~ 4690651 (+) True G467705
TU531414 lncRNA downstream 46374 4697245 ~ 4697483 (+) True G467713
TU531439 lncRNA downstream 62503 4713374 ~ 4715401 (+) True G467733
TU531544 lncRNA downstream 238516 4889387 ~ 4892909 (+) True G467819
XR_005051986.1 mRNA upstream 49764 4592804 ~ 4594190 (+) True LOC118964808
XM_036979238.1 mRNA upstream 60594 4447482 ~ 4583360 (+) False LOC110525072
XM_036979239.1 mRNA upstream 60798 4489299 ~ 4583156 (+) True LOC110525072
XM_036979230.1 mRNA upstream 318272 4280042 ~ 4325682 (+) False LOC110511702
XM_036979231.1 mRNA upstream 318272 4281743 ~ 4325682 (+) True LOC110511702
XM_021605124.2 mRNA downstream 139967 4790838 ~ 4792423 (+) True LOC110525174
XM_036979244.1 mRNA downstream 192004 4842875 ~ 4935449 (+) False bmp2k
XM_036979245.1 mRNA downstream 192005 4842876 ~ 4935449 (+) False bmp2k
XR_005051987.1 mRNA downstream 263995 4914866 ~ 4918091 (+) True LOC118964809
XM_021605130.2 mRNA downstream 928903 5579774 ~ 5585518 (+) False prdm8b
TU530344 other upstream 870614 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 1661529 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 1809844 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 2234696 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 1457508 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 1504576 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 1504576 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 1543901 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 1559328 6210199 ~ 6244501 (+) True G468755

Expression Profile