RNA id: XM_036979244.1


Basic Information

Item Value
RNA id XM_036979244.1
length 6102
RNA type mRNA
GC content 0.49
exon number 16
gene id bmp2k
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 4842875 ~ 4935449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGGACCACAACAAACCAACCCACCCACTTATTTGTGCTTCTGAGAGTCAAGAAGGAGGTCGAAGTTTACCGAGTCTGCGCCTGGCTGGTATCAACAAGACACGAGGCCGAAGACATGTTAAAATAAATCGAACCACCGGAATTTGCACGCGATAGTTAATGAACGGTCCTTGCGGAGATTCGGTGCGATTGCACGGTGGTCACATGTGGTCGTAGCTAGTTTATCTTGATAGACGCAAGTGAAGACAGTTAGCCAACCATCAAAGCCTAGCGGGGAAGTACCCCTAGACAAGTAGCGGGCTGAAGGCAAGGGTTTCTTCGATAAACACAATCGTTTGACAAAGGAGCAGTAGGACATCTTGTAGCCAGTCGCCTACCGTGTTCACAACACCGATATCTTGCTATATGCTCCTTTGTGCTTTAACGTATCTTCTAGCGCTCGTTGTTGAAGCGTCTACCTAGCACAGACTGTTTTGGTGCAGCGACGCCTGTATGAGTGCCTGAATAGCCACACACTATAGCTGGCTGATGTTACATTGGATCTAGCTCACAGCCGTGCATCTACTGTCACATTATGTCGCTTTAACGTCAATAGGACTAAACTGCGGAGCTCATTTAGTTGTCAACTCGGAAGCAGAGGTTCTTAGCCAGATATCTAACTGAACAGCTGACCAGTCGGTCGAGTGGAGCAACATTTCCTCGCCTTGCTGTGTCATGACATTAAAGTGCAAGTCAAGTCATTTCAGAGAGTACGCAAGATAGGAGGAACATTTGGCATAAGTAGATAGGTGGGGACAGGAATCCTACATTAAAGTTGACTACTGTCGACCGTAAGTTGAACCAAAGGAGTGTATTTGTAGGTCGGTCTCGACAGCACAGAATGAAGAAGTTCTCCCGTATGTCGGAGAGCGGCGGTCCGGGAGGGGGGTCCGGGTCGGGCTCTGGAGTCGTTAGTAACTGCTTCGGGAAAGTGTTCGCCGTGGGCCGGTATCAAGTCACGGTGGAAGAACTCATCGCAGAAGGTGGGTTCTCTGTGGTGTTCCTGGCCCGGACACACAGTGGCATGCGCTGCGCTCTCAAGAGGATGTACGTCAACAACGTCCCTGACCTCAACATCTACAAGAGAGAGATCActattatgAAGGAGCTGTCTGGTCATAGGAACATAGTGAACTACCTGGACTCTACCATCAACTCAGTAGGGGACAGTGTGTGGGAGGTGCTCATTCTCATGGAGTACTGTAAAGcTGGTCAGGTAGTGAAGCAGATGAACCAGCGTCTCCATATAGGGTTTACGGAGCCGGAGGTGTTGACCATCTTCACTGATACCTGTGAGGCTGTGGCCAGGCTGCATCAGTGTAGAACCCCTGTCATACACAGGGACCTGAAGGTAGAGAACATCCTCCTGAGTGATAATGGGAGTTATGTTCTGTGTGATTTTGGAAGTGCTTCTCTCAAAGTGCTGCTTCCACATAAAGACGGAGTGACCGCTGTGGAGGACGAAATCAGGAAGTACACGACCCTGTCTTATCGAGCTCCAGAGATGATCAACGTGTACGCAGGGAAGGCCATTACCACCAAGGCTGATATATGGGCTCTTGGTTGCTTGTTGTACAAGCTGTGTTTCTTCTCGCTCCCGTTCGGGGAGAGTCAAGTCGCCATATGTGAGGGAACCTTTGTCGTTCCCGACAATTCCAAATTCTCCTTCAAGCTGCACTGCTTAATCAGATATATGCTTGAGCCTGACCATGAGAAGAGACCAGATATATATCAAGTCTCCTACTTTGCCTTCAAGTTAGCTGGAAAGGAGTGTCCTGTGCCAAATCTCCTTAACTCTCCTCTCCCCACGTCACTTCCTGAGCCGCTCACAGCCAGCCAATTCGCTGCCAGGAAGAGTATGACGAAAGCCAGAATCACAGAGTCCGTGGGCCCGACGGCAACTTCCATCACTCCGAGACAGAGACCCAAAGCTACAAACAGTTATGTGCTACCCATTCCTGTAGCAGCCGTCACCCCGGTCGCTGCCACGCCCATCGTCACCCCGGTCGCTGCCACGCCCATCGGCACCCCGGTCGCTGCCACGCCCATCGGCACCCCTACAACTGAGCCTTCtgtacctgtcagcaatgggCAGAAAGCGACCACCCCAGGGAGTGGGCAGCCGGTGGCGCCACAGACAGCCAACAGGGTCCTCCAGCAGCTGCAGCCTGGGGACCTGCGTCTGCAACAACAGGATCCActtcaccctgtccatccacagcagctccaataccttcagTACCAGCAGGCCCTTCAGCAGTCGATCCAGCTCCAACAGCTActccaacagcagcagcagcagcaggccctGCTCCAACAACCGATGATGTTGCAGCCCATGAATCAGCAACAACAGACTCACTACGCAGCCATGATGCACCAGTACCAACGGGCTTTTGCACAGCAACAGCATCAACACCCCACCCAGCAGCCCTATCCTCTGGAGTGTCAGCTTCCTCCGGGCTCCTATAACCTTGCTGGGCCTGTGCCTGGGACTATGTCCCCCGTGGAGCCTCCAGCCACTAACACCAGTAGAAGCCCTCTGGTGGACTTCAAGGtgaccacccctcctccccagaGCCTGGTCACCCCCCAGAGCCACCCTCCTGACATGTCCCGATGGAACCCCTTCGGAGAGGACAACTTCTCCAAACTGACAGAGGAGGAGCTGCTGGACCGAGAGTTCGACCTCCTCAGAGCAAGTAAACCTCTGGAGAGAACCAGTAGCCAGGAGGCAGACCGACCGCTGCAGCCAATCACCCCTGAAGACTTGTTTGGCTCCTCCCCCTTCCTGTCTAGTGCAGGTTCTAGTGTGGTGGTGATAACTGATCAGCctattgaagagctcagtaaccCAGTCGGTGCCCCCGTACCTGTTCCTGTGGGCCAGCCAGCCCTTGAGGAAGTGCTGCAACCTCCGGTGGCAAAGGAGCACAAACCAAGTAGGAGGAGAAACTCTCCTATTGGCGGTTCACAAACGACTCGCAAACCAGGTGGTGACGAATCAGACAGTGACTTTGAGTCAGATCCTCCTTCCCCTAAGAGCAGCGAGGAGGaagacgacccggaggacgacgAAGGTCTGAACAACGAGCACAGAGAGTTCTTCAACGAACTGGAAGATTTGGAGGAAACGGAGATGCTGGGACATAGGCCTCTGCTGATGGACTCAGAGGCTGAGGAAGAGTACGACAAACACAGCTCCGACTCAGACTATGAACCCAGGAAGGTTAAGGAAGGACTTACTAGGAAGCTAAAAGGAGGCGTGGCTACTGCCACCCATGAGGGAAGTCCGAGATTGGAGTCAGAAGACACACTAATCACGATTACGCCTCCCGAGTCACCTGGTGTGGTGGCTGTTAGAGCATCCCCTTGTGTCGGTGGCATTGTGGACGTGTTTGGTGAGGATGTGTTTGGTGCTGTGCCCTTCTTTCCTCCAGCGGCAGCTCCAACAGCAGACATCTTCTCCGCGGCTCCCTTCAGACAGGTGAGCCAGGAGGCCATAGTCAACCAGCCCAGCCAGACCGTGGACGAGTTAGACGTCTTCACTAAGGCTCCGTTCAGCCGGAACCTCTCCAAATCTGGCAAGACTGGAAGCAGCGACTTCTCTATGGGTCGGACTCCGCCGGTGTCCCCTGAAAGCATCGACCCGTTCGGCTTCTCTCCCTTCCAGCCCGGCCCCACGGGTCTGCCACCAACCACCTCCAGGAGTGCCGAGGACATCTTCCGTCCAGCCTTCGAGAATTCTCTCAGCCCCCAGCAGCAGAGGCTGAAGCAGCGTAGCCTCCAGAAGTTGTCCTCACGTCAGAGGAAGTTCTCTGGTGGCACCAGCGGTGGCAGCAATGGCAAGCGCCACCACGGCACGCCCACTGGCGGTCGCAAGAACAACAAGCCCAGCTTCCGAACCCCCGAGCGCATCCGCCGGCACAAGAAGGTCGGCAGGAGGGACTCCCAGAGCTCCAACGAGTTCCTCAGCACCTCAGACTCCAAGGAGAACATCGGCGTCTGCGGCGTAACGATAGCAGACACCGACAAAGACAAAGGGGCTTCCCTGCCTAGCCTTCCTCATGAGGTCGACCCCTTCGGAGCCAATCCCTTTGGTCCTCAGGATGGCAGCCGACTTAACCAGTACCAAGGTCTTCTGGGGGACAGCAGGGCAGACATGGGTTCGGCCAATGGCAGGCCTCGGACTAGCTCCCTCCATGATGCGTTTGGGGATGGGAACATCATGGATGACTTTGGAGCGGTACCCTTCACAGAACTGGTGGAGCACCCTGGGCCTGAACAACAGCCGTCACAGCCAGTAGAGCTGGATCCTTTCGGGGCTGCACCGTTCCCCTCCAAACAGTGAATGTCTTGCTAGTCTTCCCGCCACACACACTCTCGTCtttctcaatcacacacacactgctgtgttACACCAAGCCTATGGAGTCCCGGGGAGATATTCCCTTCCAAGGGATGTCAACTAGCTTGGTGGTGTGGTAGTTGATTCTATTTCCAGCCAAATTTAACCGCGATCGGCAACTGCGCTAATGTTTTtccaatgcccccccccccaaaatgattTTTTTAATACATGAATACCTGGATTTTGGGATTAACAAAACCAACATAAACCTGTGGCTGAATTTTATTTCAGGTTCTGTATGAAGTTCCTTCGCCTGTACCTGTTAGCTGACAAGCCTTTTATGCTGCGTCGCAATACGTGTCTGAGACATGGAGATCGATTTTTGGTTTCACTCAAGATCATACTGTGTCAAACAAACAACAAGATTGCTCAGTTTTCAGATCACTTGAGTTGCTgcaaaaacaacacttttttttttgtaaagatTGTGGCCTCCATGATCTACCAATAAGATTTAATTTAGCACCATAAAGCCTTATAAACATGACTCCGCCTTGCTGCACAGTACCTCGGAAGCCATTTCCTTAGCCAAATGGTTAACATTGCCTTTTGTGTCAACGGAGTGATTCGTTTCAGAGCCTTTATCACTTTGTCATTTCACCCTTCTTAGACCCTTTCATTtctatgtattttatatatatatatatatataattttttccATTTAGTCTACTTACAGTAGTAGATAACAGCTAATTTAGTTTGTTGGGATTTTTCATTGCAATATATTCACTAGAATGAAAGGGATTCGGGTTTGTTTAATTTCTTTTTAAAGATGActctttttttattatttagGATTTTTCATTTTAGGTTTAATTCCAGACTTTGAACTTGTCAATAAGTACTGTTTTAATGTGATCTTTTACctcaaaacaataaaaaataaaaatcattatCATTTTTTGAATAAGGGGAAAAACACAACCCATTTTTCCTACATGGCGATATTGAATATAATATATCTGACTACTTCCACCTCTTGAGACAGTCTTCTGTCTTTGGTAACATAAACCATGCCAAATCTACTACCATTTACTTGTAGTCTAATTAGAATCAGGTCATGTGTCCAAATTGTTTAAATTAATGCACTTTCAGCGTCGACTCTTCCATTGGCTAGTTATGAATCTGAGGCTACAGAAAGGACAAACATGTCGCTGTCTGATAACCCCgtaacactattattattattattattattattattattattattatttgttttcatTCTATTGAAAGCAGTAACTCTCAATCTACTCTGAACATTTCATGACTCGGATCAAGAAGCTATTCAAAATGGAAGTTGCATAATTGTATGTTCATTAAGCAGAAAaatatggataaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatttttttttttttttgttgaatttccTGAAAAGTTTGTTTAGGAGATGAGATGATTCTCAGACAGTGACGATATGTACCAACCTTTGGCACATTAACTTTGACTGAAAAAAAGCTCGTAGCTGCCTTATTCGCCTAGCCTATGGAACCCTGTGGTTTAACATGTTTatgtttcatttttatttaaGGTTAATCTTGTTTTGTGTTTATCATGCTATACTGCTGTCCAATAATGCAATAAACAAGTTTGATTTAAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU531439 lncRNA upstream 127474 4713374 ~ 4715401 (+) True G467733
TU531414 lncRNA upstream 145392 4697245 ~ 4697483 (+) True G467713
TU531405 lncRNA upstream 152224 4690443 ~ 4690651 (+) True G467705
TU531400 lncRNA upstream 161980 4680689 ~ 4680895 (+) True G467700
TU531332 lncRNA upstream 210743 4631562 ~ 4632132 (+) True G467643
TU531559 lncRNA downstream 6927 4942376 ~ 4942599 (+) True G467834
TU531564 lncRNA downstream 16134 4951583 ~ 4951844 (+) True G467839
TU531565 lncRNA downstream 16911 4952360 ~ 4952649 (+) True G467840
TU531567 lncRNA downstream 19770 4955219 ~ 4956140 (+) True G467842
TU531530 lncRNA downstream 58478 4993927 ~ 4996116 (+) True G467807
XM_021605124.2 mRNA upstream 50452 4790838 ~ 4792423 (+) True LOC110525174
XM_021605116.2 mRNA upstream 192004 4643954 ~ 4650871 (+) False LOC110525169
XM_021605117.2 mRNA upstream 192004 4644857 ~ 4650871 (+) True LOC110525169
XR_005051986.1 mRNA upstream 248685 4592804 ~ 4594190 (+) True LOC118964808
XM_036979238.1 mRNA upstream 259515 4447482 ~ 4583360 (+) False LOC110525072
XM_021605130.2 mRNA downstream 644325 5579774 ~ 5585518 (+) False prdm8b
XM_036979247.1 mRNA downstream 644326 5579775 ~ 5585518 (+) True prdm8b
XM_036981819.1 mRNA downstream 687651 5623100 ~ 5624315 (+) True LOC118965066
XM_036979248.1 mRNA downstream 721819 5657268 ~ 5658483 (+) True LOC118964810
LOC110525066 mRNA downstream 1063377 5998826 ~ 6036553 (+) True LOC110525066
TU530344 other upstream 1069535 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 1860450 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 2008765 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 2433617 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 1172930 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 1219998 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 1219998 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 1259323 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 1274750 6210199 ~ 6244501 (+) True G468755

Expression Profile