RNA id: XM_036979247.1


Basic Information

Item Value
RNA id XM_036979247.1
length 2347
RNA type mRNA
GC content 0.57
exon number 4
gene id prdm8b
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 5579774 ~ 5585518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctctctctctctctctctccctctgcctctgcaGCGAAGGGCTATATCTGCGGCACCACTGTCACTTTCACGACCACACAGGGACATGTACTGACGCCGAGGGGAGGACTTGATCGTAACCTGCTCTCGAAGGCGGCAAATTGATTCCAGCATAATTTTTTTGtggattattatttatttcaacaacaacaacAACAACAGCCAACGATGGAGGAATCCAGCTCACATAAGTTGGTTTGGGACGGCGACGCCAAAGCGGTGCAGCAGTGTCTAACGGATATATTCACCAGCGTTTACACCACATGTGACATTCCGGAAAATGCCATTTTCGGCCCTTGTGTTTTGAGCCACACGTCGTTGTATGACAGCATAGCCTTCGTAGCGCTCAAATCAACGGATAAACGAACTGCGCCCTACATATTCCGGGTGGACACGTCAGCAGCCAACAGCACGTCCGAGGGCTTGATGTGGCTGCGGCTCGTGCAGTCGGCGCGGGACCGGGACGAGCAGAACCTCGAGGCCTACGTGAAGAACGGACAGCTGTTCTACCGGTCTCTCCGGAGGATCGAGAAGGACGAGGAGCTGTTGGTCTGGTACGGGAAAGACCTGAttgagctgctgctgctgctcagtgcCGGTAAAGCGCCGGTCAAGGCCAAGGGGTCCACTCCCTACTCCTGTCCTGACTGCAACCAGCGCTTCCAGTTTGAGTTCCCCTTCCTGGCCCATCTGAGGTTCCGCTGCACCAAGAGACTACAGAGCATGGCGGCAGGCAGTGTGGACGAGGAGGTCCCCAGTAAGGAGCCAAGCACTGAGCGCCCTAATCCCAACCCTACCACCACCGCACCCACCAGAGCTAGCCCTAAACTGGGCCGCTCGGATGGGGACAGCGCCAAACCCTCCACAGACTTCCATAACCTAGCCAGAGACCTCGAGAACAGTCGCACCAGTCCGCCGAGCGACCGTGAGGCTGAGATCCGCAGCGAGAgctctgggaagaggaagttcTCCGATGTGGAGGACAGAGTGAAGGATGGTAGCAGGGCCTCTCTGAGTCTGTCTCAGTCTCACAAGTCTAAGGAGGAGCTGGCTAGCTCAGCACAGAACTATCGGGGAGTGTACGGCCTGGAGGAGAAACGACGAGGACCGACGTACTCCCCTCCAGGGTTGGGGTCCACTGAGTCGGGCGGTGAGGGTAAACGCAGCGCCTTCACCGAGGTCAAGAAGTCTCCACAGAGCCTAAAGACGCACGGTAACAGCGGCGGCACCAAAAACCTCCAGAGCTCCAACGTCGAAAACAAGGACGGAGGTCGGCCCGGCCCCGTCAACAACCCTCCCCAGGAGAAGCATCTCAACATCAGGCAGGTTCTGTCGGAGACTCAGCCTGTCCAGCCACAGACCCGCATGGAGGCCTCTCCGCTAGGGAGCGCCTTCACCTCCGTAGCCCAGCATGGTGGGGGGAACAGCGGGGAGAGGAAGAGCGCATTCAGCCAACCCTCCCGCCACGCTACTTCCTCCTTCTCCCAGATCTCTCCTCTGGTCATGACCACGCCCAAACTCCTGGACTGCCACCCTGCGGTGGGCGACACCATCTCCTCCTCTAGACTCTACCAGGCTGACCACCTGGCCGCCAAACTCCACGGCGCCGAGCTGGGCGCCAACTGCCCCGTGCCGGGCGCCATGTCCAAGCAGAGCCCGTTCCTCTACACAGCGGCTGCTGCCACAGCCTTCTGGCCTAAGAGCCAGGGCCACATCCAGCTGCAGATGCCCTCAGCATTAAccttactccctccctccttcacctctCTGTGTCTGCCCGCCCAGAACTGGTGCGCCAAGTGCAACGCCTCCTTCCGTATGACCTCTGACCTGGTGTACCACATGAGGTCGCACCACAAGAAGGAGTTCGCCATGGAGCCGATGGTTAAGAGGAGGCGGGAGGAGAAACTCAAGTGTCCAATCTGTAACGAGTCGTTCAGGGAGAGGCACCACCTCTCGCGTCACATGACCTCCCACAATTGACATTCAGATCAATAACAGACCGTTTTCACACTGCTAGAGGGCCGAACCGAGTCGAGCTGTACTGGCCTGGTTACGGAATTACATTTTGATGAAGGAAGCCTTGCTTGAAAGGACAGTGTGtaaagaatatactgtagacGAACCAGCACAGTAAGGTTTGAGTCGGCACGATAGTGGGAAAAAGAGTATCACATCACAGACCATGGGGAGGAACTTttttgctgactgactgactggctgagtgggtatatgactggctggctggctgacactgactggctatatgactggctggctgactggctggctatatg

Function

GO: NA

KEGG:

id description
K20797 PRDM8; PR domain zinc finger protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532265 lncRNA upstream 47912 5531630 ~ 5531863 (+) True G468388
TU532258 lncRNA upstream 56328 5522827 ~ 5523447 (+) True G468381
TU532227 lncRNA upstream 69871 5463182 ~ 5509904 (+) True G468371
TU532223 lncRNA upstream 120058 5459514 ~ 5459717 (+) True G468369
TU532131 lncRNA upstream 145126 5434003 ~ 5434649 (+) True G468297
TU532334 lncRNA downstream 112047 5697565 ~ 5698207 (+) True G468445
TU532374 lncRNA downstream 179661 5765179 ~ 5765640 (+) True G468483
TU532557 lncRNA downstream 307479 5892997 ~ 5893422 (+) True G468621
TU532566 lncRNA downstream 317637 5903155 ~ 5904297 (+) True G468626
TU532648 lncRNA downstream 339888 5925406 ~ 5926834 (+) True G468668
XM_036979244.1 mRNA upstream 644326 4842875 ~ 4935449 (+) False bmp2k
XM_036979245.1 mRNA upstream 644326 4842876 ~ 4935449 (+) False bmp2k
XR_005051987.1 mRNA upstream 661684 4914866 ~ 4918091 (+) True LOC118964809
XM_021605124.2 mRNA upstream 787352 4790838 ~ 4792423 (+) True LOC110525174
XM_021605116.2 mRNA upstream 928904 4643954 ~ 4650871 (+) False LOC110525169
XM_036981819.1 mRNA downstream 37582 5623100 ~ 5624315 (+) True LOC118965066
XM_036979248.1 mRNA downstream 71750 5657268 ~ 5658483 (+) True LOC118964810
LOC110525066 mRNA downstream 413308 5998826 ~ 6036553 (+) True LOC110525066
XM_036979255.1 mRNA downstream 475090 6060608 ~ 6147999 (+) False LOC110510489
XM_036979260.1 mRNA downstream 475094 6060612 ~ 6147999 (+) False LOC110510489
TU530344 other upstream 1806435 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 2597350 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 2745665 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 3170517 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 522861 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 569929 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 569929 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 609254 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 624681 6210199 ~ 6244501 (+) True G468755

Expression Profile