RNA id: XM_036979248.1


Basic Information

Item Value
RNA id XM_036979248.1
length 1216
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC118964810
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 5657268 ~ 5658483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATCGTTGTGTAACCGTTGTGTAATCGTTGTGTAACCGTTGTGTAATCGTTTAGATCTCTGTAAcattatgtttgtttgtgttttccaGGAGCGATTCACGGACGACTGTAGGTTCTGGGAGCGTTTCCAGGAGAGCAGTTACAACACTTATGCCTCGGTGTTGCACCGGAACCACCGGACGGGACGGGACTGGTACGTGGCCCTGAACAAGAGAGGAAAATCTAAGATGGGCTCCAGCCCCAGGGTCAAATCCCAGCACGTTTCCACGCACTTCCTCCCCAGGCTCAGTGTGCACAACCTGCAGAGCGTTCGTGGTTTCACCATCACCGACAGGAGCAAAGAGAGGAGGAAAAAACAGGCGCCACTGCTCAAACCGCCCTCACAACCATACAGGGATGTTAATTCAGAGACACGGAAGAGGGTGCAGACTGTCAAGTACTGGCCCAAGTTTCGGTTTGGATAGACTACGAAGTGATGAGGGAGGAAGTAATACAaactgtatgtgtgttatatgGATTGACAGGATGGATTACTGGCCAACGTAAACATGGACATGACACCTGttgtcctcaacaacaacaacaacaatcgcTGAACTTTTACTTTCCGTTATTTCAAAGCATTCCAGATGTCATAAAATAGTGAGTTAAAAACCTAAGGGCTGTAACATGCAGTCATTAAGCTTTGTGATTGTAAGGCTATGATGGTTACAATGGTTGTACAGCTATGATGGTTACAATGGTTGTACAGCTATGATGGTTACAATGGTTGTACAGCTATGATGGTTACAATGGTTGTACAGCTATGATGGTTACAATGGTTGTACAGCTATGATGGTTACAATGGTTGTACAGCTATGATGGTTACAACTGCTTCCGAAGGTGGTCCCCTTCGGGCCAATTAAAAACACAATATGCGATAACTAGTTCATATATAGTTAGAACCACAATATGCGATAACTAGTTCATATATAGTTAGAACCACAATATGCGATAACTAGTTCATATATAGTTAGAACCACAACATGCGATAACTACTTCATATATAGTTAGAACCACAACATGCGATAACTAGTTCATATATAGTTAGAAACACAACGTGAGATACATTACATTATCAAaagacacctgctcatcaaacatctcattccaaaatcatgggcattaaaatggagttggtccccccctttgctgctataacagactcgatttcc

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532281 lncRNA upstream 64181 5547735 ~ 5593087 (+) True G468404
TU532265 lncRNA upstream 125405 5531630 ~ 5531863 (+) True G468388
TU532258 lncRNA upstream 133821 5522827 ~ 5523447 (+) True G468381
TU532227 lncRNA upstream 147364 5463182 ~ 5509904 (+) True G468371
TU532223 lncRNA upstream 197551 5459514 ~ 5459717 (+) True G468369
TU532334 lncRNA downstream 39082 5697565 ~ 5698207 (+) True G468445
TU532374 lncRNA downstream 106696 5765179 ~ 5765640 (+) True G468483
TU532557 lncRNA downstream 234514 5892997 ~ 5893422 (+) True G468621
TU532566 lncRNA downstream 244672 5903155 ~ 5904297 (+) True G468626
TU532648 lncRNA downstream 266923 5925406 ~ 5926834 (+) True G468668
XM_036981819.1 mRNA upstream 32953 5623100 ~ 5624315 (+) True LOC118965066
XM_021605130.2 mRNA upstream 71750 5579774 ~ 5585518 (+) False prdm8b
XM_036979247.1 mRNA upstream 71750 5579775 ~ 5585518 (+) True prdm8b
XM_036979244.1 mRNA upstream 721819 4842875 ~ 4935449 (+) False bmp2k
LOC110525066 mRNA downstream 340343 5998826 ~ 6036553 (+) True LOC110525066
XM_036979255.1 mRNA downstream 402125 6060608 ~ 6147999 (+) False LOC110510489
XM_036979260.1 mRNA downstream 402129 6060612 ~ 6147999 (+) False LOC110510489
XM_036979254.1 mRNA downstream 404863 6063346 ~ 6147999 (+) False LOC110510489
XM_036979259.1 mRNA downstream 404863 6063346 ~ 6147999 (+) False LOC110510489
TU530344 other upstream 1883928 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 2674843 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 2823158 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 3248010 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 449896 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 496964 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 496964 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 536289 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 551716 6210199 ~ 6244501 (+) True G468755