RNA id: XM_036979253.1


Basic Information

Item Value
RNA id XM_036979253.1
length 3297
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC110510489
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6060608 ~ 6147999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAAATACCTGAGCAAAGGGGAAAGTTGTGTCTCAGTATAGGACTGAGGTGTAGATTGTTCTGTAAAAACGTGTAGATATGCACATATAGTCACTATTAGAGTTGTTATGAATTTAAATCAACTATTTTGAATGTGAAGTCGAGGACGTGAAGACCAGTAAAGTTAAAATGGCAGAGTCCAGAGTTCATAATCAGTTTCAACTCACCTCAGAAGACTATGTGTGGGCTGATGTTGGTGAAGAGGTCACCCTCCCCTGTCACCTCTCACCTGACTACAGTGCTGTTGCCACAACGATCAGGTGGTTTAAAGAGACAGAGTGTATTTACCTGTATAAGAATGGCCAGGTGACAGAGAGGAGTGGCTATGAGGGCAGAGTGAGTCTGATCACCCAGGAGCTGAAGAGAGGCAACGTGTCTCTGAGGCTGAGAGACTTCAGGAGGTCAGATAGAGTTGTCCACATCTGTCAGGTCATCCATGGAGAACAGAAGGAGGAGGCTGCAGTGGGTTTATGGGAAAGAGAAGtacCAGCAAGAAgATTAGTCTCAGGTTCACGGTATTTACAACGTGAGACCCAGGAGAACAAGCTGAAGAGGGAGGCATCAGCTGGTGAGCTTGTTAAAATGGCAGAGTCCAGAGTTCATAATCAGTTTAAACTCACCACTAAAAACAATGTGAGGGCTAATGTTGGTGAAGAGGTCACCCTCCCCTTTCACCTCTCACCTGACACCAGTGCTGTTGCCACGACGATCAGGTGGTTTAAAGGGACAGAGTGTATTTACCTGTATAAGAATGGCCAGGTGACAGAGAGGAGTGGCTATGAGGGCAGAGTGAGTCTGATCACCCAGGAGCTGAAGAGAGGCAACGTGTCTCTGAGGCTGAGAGACTTCAGTTGGTCAGATAGAGGAGTCTACATCTGTCAGGTCATCCATGGAGAACAGAAGGAGGAGGCTGCAGTGGGTTTATGGAACAGAGGAGAAGCAGTACAGGtatTGGCCTCAGGTTCACTGTATTTACAATGTGAGACCCATAAGGACAAGCTGAAGAGGGAGGCATCAGCTGGTGAGCTTGAGTTGAAGATGTTTAAAGAGATGATGAATCAACTAGAGGACAGCAACCACAGACTGGGAGAGAAGGACAAACTACTGGGAGAGAAGGACAAACtactggaagagagagacaaacaactggaagagagagacaaacaactggaagagagagacaaactactggaagagagagacaaactaCTGGAGGGAAAAGAAAATGAACtaaaagagaggagacaggaagtagaagagaggagacaggaagtagaagagaggagaaaccCAGAACTCCCCTTCAAACATGGAGAGATGTCAGATACAGGTTCCATCCTCGCAGTCAGGAGGAGAAACAGCAAGGACCTTCCTCCATTCATGGGAGGAGAGACCTCTGATACAGACCCCACACTTCCACTGAGGAGGACAAACAGCATGGAGTTTATTCCTCCAGATAtgggaggagagagcagcagtCCAGACTCCCCAGTGTCTCCCAGTGTGTCTGAGCTGAGACTGGTGCTGCTGGGGAGGACTGGGGCTGGGAGGAGTGCAGCAGGAAACACCATCCTGGGCAGAGAGGAGTTTGGGGCCCAGGCCAGCCCCTCTGCAGTGACCCAGAGGactaagaggagagagggggacgtGTGTGGGAGACGGCTGGTGCTGGTGGACACTCCAGACTGGTTCTGTCCTGGACTCTCTCTGAAGGAAATGAGACAGGATGTGGGGctctgtgtccgtctgtctgcccCGGGAccccatgccttcctcctggtcATACCAGTGGAGCCCTCtaagtgggaggagagaggggtgctggagagaatggaggagatgTTTGGGGAGGATTTTTGGGGACACACTGTGATTCTATTCACCCATGATGATGGACTGAAAGAGCAGAGCATTGAGGAGTTTCTCCAAGCAGGAAGTCAGGACCTCCAGCAGCTTGTAGAGAAAAGTGGGAGCAGGTACCACGTCCTCAACATTAGGGACAGGGCCCATGGCACTCAGGTATCAGAGCTGCTGgatcaggtagaggagatggtggcaggaaacagagagagattctACAGCAGTCAGACCTACCAAGAGGCAGAGGACCaggttagagagatggaggggaagatccagagagagagaggagagaggaaacagagggaggagagagacttgAGAGAGAGGCTTCAGAAGGAGTTGCAGGACTCTCTGATAAAGATAGAGGGAGTGATCCAGGAACATGAGGGAGATATCAGAACACTCAGTGAAAGAACCAGTGAACTGGAGAGACAGgtggaagaagagagggatgaggagaagaaaagagagctGGAGAGGGAGCTGAAGAGGGAGTCTgataggagggaggagatggagagaaagctggagagatttagagagaagagagagaatgagaggagggagatggaggagagacacagacaggagaTAGAGGAGATGATGGAGAACTATGAAGGAGAGGCCAGAGTTGAAGCAGAGAGAAACCTGATGAAGATAGTCCTACCTGAGTTACAGAGGAATATCATGATCTCACAGACAAAGATGGAGAGGGAGTTCAGCAGACAGATGAAAGAGAAgaatatagagatggagagactaAGACAGAACTTGAAAGAAGTCAGGGAAGCTCACTCAGTGTTGCAGAAGGGACTGGAACGAGAGGGGAAAGGTCAGAGGGCACTGATAGGGTTGTTGGGCTGGGTCAGGAGAAACTCATCAAGTTGGCTTCTCCACAATCTGATATGATTCACCATCACCGTCTATGATGACGAACCAGACCAGGTCTACTGTCCACTGTACCGTGGGGGGTGACCATGGATCATGGTGGTCATGGGGAAAACAGGACAGAATCAtgtctggtccagtctacagtgtcaagagaaggaggggagggaggtctGTAAAGATCTTGATGAGACGTAAAACACAATTCCAATCCAACGTAGATTATTGACCTTTGCACTGCAGACCTTTAGAATGGAGAGGGTTATGGGGGGTCAGGAGGTCAGCGGGCGGAGTCAGAGACTGAGAACTCTAAAGATCTGAGTGAGACTTTTACTCAGTGTTTGAGGAGGTCTACTATTGAACAGAGAACCATACTGTATTTACCACACACTACTTCCTGTTCTTATTCAAATTGTTTCATGTTGAAACtttaaatatacactgagtgcacaaaacattaagaacaccttcctaaaggTGTTACAATAAAATGTAACTTTGTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532728 lncRNA upstream 7888 6100902 ~ 6104592 (+) True G468731
TU532724 lncRNA upstream 14367 6097800 ~ 6098113 (+) True G468729
TU532622 lncRNA upstream 33620 6078205 ~ 6078860 (+) True LOC118964812
TU532702 lncRNA upstream 68707 6043290 ~ 6043773 (+) True G468714
TU532698 lncRNA upstream 76964 6035292 ~ 6035516 (+) True G468710
TU532585 lncRNA downstream 23429 6171428 ~ 6173403 (+) False LOC118964813
TU532596 lncRNA downstream 23429 6171428 ~ 6173403 (+) False LOC118964813
TU532603 lncRNA downstream 23429 6171428 ~ 6173403 (+) False LOC118964813
TU532606 lncRNA downstream 23429 6171428 ~ 6173403 (+) True LOC118964813
TU532760 lncRNA downstream 32234 6180233 ~ 6205812 (+) False G468747
XM_036979251.1 mRNA upstream 23757 6078177 ~ 6088723 (+) False LOC118964812
LOC110525066 mRNA upstream 75927 5998826 ~ 6036553 (+) True LOC110525066
XM_036979248.1 mRNA upstream 453997 5657268 ~ 5658483 (+) True LOC118964810
XM_036981819.1 mRNA upstream 488165 5623100 ~ 5624315 (+) True LOC118965066
XM_021605130.2 mRNA upstream 526962 5579774 ~ 5585518 (+) False prdm8b
XM_036979262.1 mRNA downstream 18944 6166943 ~ 6173411 (+) False LOC118964813
XM_036979286.1 mRNA downstream 76255 6224254 ~ 6231400 (+) False LOC110510500
XM_036979285.1 mRNA downstream 275142 6423141 ~ 6428139 (+) True LOC110518225
XM_036979284.1 mRNA downstream 334013 6482012 ~ 6488606 (+) True LOC118964815
XM_021605151.2 mRNA downstream 460922 6608921 ~ 6609844 (+) True LOC110525188
TU530344 other upstream 2339140 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 3130055 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 3278370 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 3703222 2399761 ~ 2409258 (+) True zfr
TU532738 other downstream 7448 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 7448 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 46773 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 62200 6210199 ~ 6244501 (+) True G468755
TU532794 other downstream 106477 6254476 ~ 6343615 (+) False G468768

Expression Profile