RNA id: XM_036979251.1


Basic Information

Item Value
RNA id XM_036979251.1
length 3457
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC118964812
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6078177 ~ 6088723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGAGGGAGGCTTGAGTGACAGGATACATCTGATTGGTCCTGTTTGTTCTGTATATAGTGATGTCGTCTACCACACAGAACTCACCTCTCTGTTTTACACCATAGTCTCAGGATCACGGTATTTACAACATGAGACCCAGGAGAACAAGCTGAAGAGGGAGGCATCAGCTGGTGAGCTTGAGTTGAAGATGGAAAaagaattaaaaaataaattaagaCAGGAGATGATGAAACAACTAAAGGAGAAAGACACACAGCTCGATGATATGACccaggaagtgagagagaaagagagactcctGGAGGAGAAGAACCAGATAATGGAACAGAGGGAGAAACTATTAGAAGAGAAAGAAAACCAACTGGAAGAGAAAGACAAGCAACTAAAGGATAGAGACATTCAACTAGAGGACAGAGACCACAGACTGGGAGATGAAGACAAGCAACTAAAGGATAGAGACATTCAACTAGAGGACAGAGACCACAGACTGGGAGATGAAGACAAGGAACTAAAGGATAGAGACATTCAACTAGAGGACAGAGACCACAGACTGGGAGAGAAGGACACACtactggaagagagagacaaactaCTGAAGGATAGAGACATTCAACTAGAGGCTCTTAGAAAGAACCTGCAGGACAAGAACAGCCAAGTAGAGAACTTCAGAGTCCTACTGCAGGAAAAATACCTTCAACTAGAGGACAGGAACCACAGactgggagagaaggacagactactagaagagagagacaaactaCTGGAGGGAAAAGATCTTCACCTAGAGGACAGAAACTATAGactgggagagaaggacagactactggaagagagagacaaactaCTGAAGGAAAAAGACCTTCAACTAGAGGACAGGAACTATCGactgggagagaaggacagactactggaagagagagacaaactaCTGAAGGAAAAAGACCTTCAACTAGAGGACAGGAACTATCGactgggagagaaggacagactactggaagagagagacaaactaCTGAAGGGAAAATACCTTCAACTAGAGGACAGCAACCACAGactgggagagaaggacagactaCTGGAAGAGAAAGAGGACCAACTAAAGGAAAAGGACCTTCAACTAGAAGACAGGAACCACAGactgggagagaaggacagactaCTGGAAGAGAAAGAGAACCAACTAAAGGAAAAAGACCTTCAACTAGAAGACAGGAACCACAGACTGGGAGAGAAGGACAAACTACTGGAAGAGAAAGAGAACCAACTAAAGGAAAAAGACCTTCAACTAGAAGACAGGAACCACAGactgggagagaaggacagactaCTGGAAGAGAAAGAGAACCAACTAAAGGAAAAATACCTTCAACTAGAAGACAGAAACCACAGACTGGGAGAGAAGGACAAACTACTGGAAGAGAAAGAGGACCAACTAAAGGAAAAATACCTTCAACTAGAGGACAGGAACCACAGACTGGGAGAGAAGGACAAACTACTTGAAGAGAGAGACAAACTACTTGAAGAGAGAGACAAACTACttgaagagagagacaaagaactggaagagaggagacaggaactaaaagagaggagacaggaagtaGAAGAGAGGATACAGGAAGTAGAAGAGAAAGACAACCTACtcgaggagagagagaagcagttaAAGGAAAGAGACAAACtactggaagagagagacaaactactggaactactggaagagagagacaaagtactGGAGGGAAAAGGAAATGAactagaagagaggagacaggaagtagaagagaggagacaggaagtaGAAGAGAAAGACAACctactagaggagagagagaagcagttaaaggagagagacaaacaggtGGAGGATGTCAACAATGAAAATGCTGAACTGGCTCAACAGATATGTGATGTGAAGactgaggtagagagactgagaagagagATCTCAGCCCAGATGACTGAACATGGAGAGACGTCAGATACAGGTTCCATCCTCCCAGTCAGGAGGAGACACAGCATGGAGTTTCCTCCACTTAtgggaggagagagcagcagtCCAGACTCCCCAGTGTCTCCCAGTGTGTCTGAGCTGAGACTGGTGCTGCTGGGGAGGACTGGGGCTGGGAGGAGTGCAGCAGGAAACACCATCCTGGGCAGAGAGGAGTTTGGGGCCCAGGCCAGCCCCTCTGCAGTGACCCAGAGGagtaagaggagagagggggacgtGTGTGGGAGACGGCTGGTGCTGGTGGACACTCCAGACTGGTTCTGTCCTGGACTCTCTCTGGAGGAGATGAGACAGGATGTGGGGctctgtgtccgtctgtctgcccCAGGACCCCACGCCTTCCTCCTGGTCATACCAGTGGAGCCCTCtaagggggatgagagaggggtgCTGGAGAGAATGGAGGACATGTTTGGGGAGGGTTGTTGGGAACACACTGTGATTCTATTCACCCATGATGATGGCCTGAAAGAGCAGAGCATTGAGGAGTTTCTCCAAACAGGAAGTCAGGACCTCCAGCAGCTTGTAGAGAAAAGTGGGAGCAGGTACCACGTCCTCAACATTAAGGACAGGGACCACGGCACTCAGATATCAGAGCTCCTGgatcaggtagaggagatggtggcaggaaacagagagagattctACAGCAGTCAGACCTACCAGGAGGCAGAGGACCaggttagagagatggagggaaacatccagagagagagaggagagaggaaacagagggaggagagagacttgAGAGAGAGGCTTCAGAAGGAGTTGCAGGACTCTCTGATAAAGATAGAGGGAGTGATCCAGGAACATGAGGGAGATATCAGAACACTCAGTGAAAGAACCAGTGAACTGGAGAGACAGgtgaaagaagagagggatgagaagaaGAAAAGAGAGCTGGAGAGGGAGCTGAAGAGGGAGTCTgataggagggaggagatggagagaaagcaggagagatttagagagaagagagagaatgagaggagggagatggaggagagacacagacaggagaTGGAGAACTATGAAGGAGAGGCCAGAGTTGAAGCAGAGAGAAACCTGATGAAGATAGTCCTGCCTGAGTTACAGAGGAACATCATGATCTcacagacaaagatacagagGGAGTTCAGCagacagatggaggagaagaATAGACAGATGaaggagaaggatagagagataaagagactgAAACAGAACTCAGAGGAGGTGTATATAACCAGTGAGATGAGCAGGCAACATGCACAGCGAGAACCAATAGGAATTAGAGGAGGAAGAGACGGAAGAAGGATGAGTAGGATGAGACGACTGTTttgtgtaggggttagagaggagaccagatagagacaactgttttgtgtaggggttagagaggagactAGATAGAGACAACTGTTTTGTGTAGGGGTTTGAGAGGAGACCAGTTAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532702 lncRNA upstream 34404 6043290 ~ 6043773 (+) True G468714
TU532698 lncRNA upstream 42661 6035292 ~ 6035516 (+) True G468710
TU532696 lncRNA upstream 52928 6024989 ~ 6025249 (+) True G468708
TU532693 lncRNA upstream 56555 6021232 ~ 6021622 (+) True G468705
TU532690 lncRNA upstream 64421 6006145 ~ 6013756 (+) True G468702
TU532724 lncRNA downstream 9077 6097800 ~ 6098113 (+) True G468729
TU532728 lncRNA downstream 12179 6100902 ~ 6104592 (+) True G468731
TU532639 lncRNA downstream 13023 6101746 ~ 6155418 (+) True G468659
TU532742 lncRNA downstream 21049 6109772 ~ 6157086 (+) True G468733
TU532744 lncRNA downstream 25758 6114481 ~ 6115778 (+) False G468735
LOC110525066 mRNA upstream 41624 5998826 ~ 6036553 (+) True LOC110525066
XM_036979248.1 mRNA upstream 419694 5657268 ~ 5658483 (+) True LOC118964810
XM_036981819.1 mRNA upstream 453862 5623100 ~ 5624315 (+) True LOC118965066
XM_021605130.2 mRNA upstream 492659 5579774 ~ 5585518 (+) False prdm8b
XM_036979253.1 mRNA downstream 23757 6112480 ~ 6147999 (+) False LOC110510489
XM_036979252.1 mRNA downstream 23758 6112481 ~ 6147999 (+) False LOC110510489
XM_036979257.1 mRNA downstream 23759 6112482 ~ 6147999 (+) False LOC110510489
XM_036979256.1 mRNA downstream 29355 6118078 ~ 6147999 (+) False LOC110510489
XM_036979258.1 mRNA downstream 45022 6133745 ~ 6147999 (+) True LOC110510489
TU530344 other upstream 2304837 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 3095752 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 3244067 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 3668919 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 19656 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 66724 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 66724 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 106049 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 121476 6210199 ~ 6244501 (+) True G468755

Expression Profile