RNA id: TU532585


Basic Information

Item Value
RNA id TU532585
length 1938
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC118964813
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6166943 ~ 6173411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtctcaatatccttctttaaccttcttcctccccttcatctacactgattgaagtggatttaacaagtgacatcaacaagggatcatagctgatcacctggattcacctggtcagtctatgtcctggaaagatcaagtgtccttaatgttttgtacacacagtgtaTGTCTACAGTGACTTGATGAGTAATACATTAGATTATTGTTCTGTTGCTGTTGAGACAACTGTTTTGTgttagagaggagaccagagagagacaactgttttgtgttagagaggagactagagagagacaactgttttgagttagagaggagaccagagagagacaactgTTTTGTGTTAGAGAGGAGACTAGTTAGAGAGACAACTGTTTTGTGTtcgagaggagaccagagagagacaactgttttgtgttagagaggagaccagatagagacaactgttttgtgttagagaggagaccagagagagacaactgttttgtgttagagaggagaccagagagagacaactgttttgtgttagagaggagaccagagagagacaactgttttgtgttagagaggagaccagagagagacaactgTTTTGTGTTAGAGAGGAGACTAGTTAGAGACAACTGTTTTGTgttagagaggagaccagatagaGACAACTGTTTTGTGTTAGAGAGGAGACTAGTTAGAGAGACAACTGTTTTGTGTTAGAGAGGAGACTAGTTAGAGAGACAACTGTTTTGTGTTCGAGAGGAGACCAGATAGAGACAACTGTTttgtgtaggggttagagaggagactAGTTAGAGAGACAACTGTTTTGAGTTAGAGATGAGACTAGTTAGAGAGACAACTGTTTTGAGTTAGAGATGAGACTAGTTAGAGAGACAACTGTTTTGTgttagagaggagaccagatagaGACAACTGTTTTGTGTTAGAGAGGAGACTAGTTACagacaactgttttgtgtaggggttagagaggagactAGTTAGAGAGACAACTGTTTTGAGTTAGAGATGAGACTAGTTAGAGAGACAACTGTTTTGAGTTAGAGATGAGACTAGTTAGAGAGACAACTGTTTTGTgttagagaggagaccagatagaGACAACTGTTTTGTGTTAGAGAGGAGACTAGTTACAGAGACAACTGTTAtgtgtaggggttagagaggagactAGTTAGAGAGACAACTGTTttgtgtaggggttagagaggagactAGTTACAGAGACAACTGTTAtgtgtaggggttagagaggagactAGTTAGAGAGACAactgttttgtctaggggttagagaggagactAGTTAGAGAGACAACCTTTttgtgtaggggttagagaggagactAGTTAGAGAGACAACTGTTttgtgtaggggttagagaggagactAGTTAGAGAGacaactgttttgtgttggggttagagaggagaccagatagagacaactgttttgtgtaggggttagagaggagaccagatagaGAGAACCCTACTGTATTTTCCTCCACTGTGAGAGAAACATAGCAGTGTTATTATTTTACCACAGTCACACTGTTGTTTTCTATTTGCTGACCTTCATCAATCAAAGTTCATCAGGATACTGCTGTTGTTCTGATGTTATGTTTCAAGTTGAAACCTTAAACGTATCTCTACAGTTCTCGCTAGTGGACAGACAGGCTACGCTCTGCTCACGTATCATTTGGTTCAGGGTTCAGAGGTCACAGTGAAGGATTGATGAGTAATACATGTGTTTATTATGATATGTTTGTTGACCCCATTACCCAGTGGGTAGTAATCTGTGATGTGGATGTAGCTTCCAGTTACCATGGTGATGTCTCATATTGATGCTGGGAATCTTTCCCAATGGAACTCTGTTACCACATGAGACTGATATTGTTGAAATAAAGAAATTTCACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532742 lncRNA upstream 14342 6109772 ~ 6157086 (+) True G468733
TU532639 lncRNA upstream 16010 6101746 ~ 6155418 (+) True G468659
TU532744 lncRNA upstream 55650 6114481 ~ 6115778 (+) False G468735
TU532745 lncRNA upstream 56131 6114481 ~ 6115297 (+) True G468735
TU532728 lncRNA upstream 66836 6100902 ~ 6104592 (+) True G468731
TU532760 lncRNA downstream 6830 6180233 ~ 6205812 (+) False G468747
TU532767 lncRNA downstream 16754 6190157 ~ 6192605 (+) False G468753
TU532768 lncRNA downstream 17095 6190498 ~ 6192605 (+) True G468753
TU532615 lncRNA downstream 26756 6200159 ~ 6201970 (+) True G468635
TU532640 lncRNA downstream 28675 6202078 ~ 6242781 (+) True G468660
XM_036979255.1 mRNA upstream 23429 6060608 ~ 6147999 (+) False LOC110510489
XM_036979260.1 mRNA upstream 23429 6060612 ~ 6147999 (+) False LOC110510489
XM_036979254.1 mRNA upstream 23429 6063346 ~ 6147999 (+) False LOC110510489
XM_036979259.1 mRNA upstream 23429 6063346 ~ 6147999 (+) False LOC110510489
XM_036979253.1 mRNA upstream 23429 6112480 ~ 6147999 (+) False LOC110510489
XM_036979286.1 mRNA downstream 50851 6224254 ~ 6231400 (+) False LOC110510500
XM_036979285.1 mRNA downstream 249738 6423141 ~ 6428139 (+) True LOC110518225
XM_036979284.1 mRNA downstream 308609 6482012 ~ 6488606 (+) True LOC118964815
XM_021605151.2 mRNA downstream 435518 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 509504 6682907 ~ 6692547 (+) True ydjc
TU532741 other upstream 14747 6108379 ~ 6156681 (+) False G468732
TU532738 other upstream 14747 6155447 ~ 6156681 (+) False G468732
TU532739 other upstream 14747 6155447 ~ 6156681 (+) True G468732
TU530344 other upstream 2398088 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 3189003 2978842 ~ 2982425 (+) True G465578
TU532623 other downstream 21369 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 36796 6210199 ~ 6244501 (+) True G468755
TU532794 other downstream 81073 6254476 ~ 6343615 (+) False G468768
TU532821 other downstream 204236 6377639 ~ 6379269 (+) True G468791
TU532790 other downstream 250011 6423414 ~ 6488418 (+) False G468765

Expression Profile