RNA id: XM_021605151.2



Basic Information


Item Value
RNA id XM_021605151.2
length 694
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110525188
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6608921 ~ 6609844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGCAGCACCTGCGTCTGCTACTCCTGTGCGTGCTGGCCCTGCGTCAGTGCCTGTGTGTGCCCCTGGGTGGCCAGTGTGTGGACGAGAGCTTCTGCACTAGCAGCCTGCAGGAGTACCACGCACAGCTAGTCAGCCTGCCCAACCGCCTTAACGAACGCAGTGTAGCCGCCTGGAACTACGTGGAAAAAATTGACTTGAACCGGGTGCCTCCAGTCCTTTATGAAGCCAACTGCCTTGAAAGCCACTCCTGTAAGGGTCTGGACAGCACCCTCAGGTTAGAGACCATCCCCATCACCCTCAGGATGCCCGTGCTGAGGAAAAACCCCCGCTGTACCTCCTTCTCCCTGGAGTTCGAGCCCATCAATATAGCCTGTATATGCGCCACTTCCAGACAAAGTGGATTTCTAACCGATCGATTCTAAAATATtaaaagtatttatttatttgggctATAAATGTTGAGGCTATAAATTAGATTGAATGTGTgttttgaatgtatttttttttgacaGTAGGGtaaagattattattattactattattgttgttattgttgacatCACTCAGTATACGTTCCAACTCTCATGTTAGTTGTTTGCCACAATGACAACGAAAATGTATTGGTCATTGGTCAAGAAGAAGTCAATTGTTCCCTTATCATCTGCTAAAGGCTTAAAACAGACAATAAACTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU532930 lncRNA upstream 15272 6593024 ~ 6593649 (+) True G468855
TU532901 lncRNA upstream 51863 6555708 ~ 6557058 (+) True G468841
TU532907 lncRNA upstream 52890 6553444 ~ 6556031 (+) False G468841
TU532908 lncRNA upstream 54397 6550977 ~ 6554524 (+) False G468841
TU532894 lncRNA upstream 55826 6550977 ~ 6553095 (+) False G468841
TU532959 lncRNA downstream 38840 6648684 ~ 6649239 (+) True G468875
TU532965 lncRNA downstream 48565 6658409 ~ 6708164 (+) True G468878
TU532972 lncRNA downstream 55257 6665101 ~ 6665789 (+) True G468883
TU532975 lncRNA downstream 59606 6669450 ~ 6738008 (+) True G468885
TU532998 lncRNA downstream 87528 6697372 ~ 6702759 (+) True G468897
XM_036979284.1 mRNA upstream 120315 6482012 ~ 6488606 (+) True LOC118964815
XM_036979285.1 mRNA upstream 180782 6423141 ~ 6428139 (+) True LOC110518225
XM_036979286.1 mRNA upstream 377521 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 435510 6166943 ~ 6173411 (+) False LOC118964813
XM_036979256.1 mRNA upstream 460922 6118078 ~ 6147999 (+) False LOC110510489
XM_021605152.2 mRNA downstream 73063 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 101050 6710894 ~ 6713091 (+) False ccl19a.2
XM_021605155.2 mRNA downstream 110036 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979295.1 mRNA downstream 141137 6750981 ~ 6771402 (+) True LOC110525076
trnae-uuc mRNA downstream 141884 6751728 ~ 6751803 (+) True trnae-uuc
TU532896 other upstream 55826 6550977 ~ 6553095 (+) False G468841
TU532790 other upstream 120503 6423414 ~ 6488418 (+) False G468765
TU532821 other upstream 229652 6377639 ~ 6379269 (+) True G468791
TU532794 other upstream 265306 6254476 ~ 6343615 (+) False G468768
TU532773 other upstream 364420 6210199 ~ 6244501 (+) True G468755
TU532978 other downstream 62664 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 62664 6672508 ~ 6674387 (+) False G468887
TU532982 other downstream 62664 6672508 ~ 6674387 (+) False G468887
TU532983 other downstream 62664 6672508 ~ 6674387 (+) False G468887
TU532984 other downstream 62664 6672508 ~ 6674387 (+) False G468887

Expression Profile