RNA id: XM_036979293.1



Basic Information


Item Value
RNA id XM_036979293.1
length 932
RNA type mRNA
GC content 0.45
exon number 4
gene id ccl19a.2
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6710688 ~ 6713091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcatcctcagactctctgtcatcctcagactctctctcatcctcagacTCTCTGTCATCCTCAGACTCTCTGTCATCCTCAGACTCTCTGTCATCCTCAGACTATCTGTCATCCTCAgactctctctcatcctcagacTCTCTGTCATCCTCAGACTCTCTGTCATCCTCAGAATCTCTCTCATCCTCAGACTATTTGTCATCCTCAGACTCTCTGTCATCCTCAGACTCTCTGTCATCCTCAGACTCTCTGAAGCAGAGCTCTCAAAGCAGTAATATGGCAGCTCTTTTCTTCATTGCAACACTCTGCTTGGGCTACGCAGCAgcaTTCTCAGAGGTACCCGTGGACTGCTGTCTGTCAACCACTGACATCCGTTTCCCTCGCCACTTTAAGATGGTCTCCTACCTGCTGCAGACTACAGACAGAGGCTGTGACATCGATGCCACTGTGTTTATCACCAAGACAGGGGCGAGACTGTGCTCGCCCCATCCCGCAGAGAGCAAGTGGGTGGCAGACTACGTGAAACGTCTGGAGCGAACCATCTCCCTCCGGAGAGCTAACTCACCTGAGGAGTAAATGAGCAGAGTAAGACCAggagaggagacgtggaggagtgGACGAGACATTCATTTCAACCTTTTTTTAACTGAAGAGTCGTCCTAGATACTGTAGCAGACCAAATCGTTTTTACAAAATACTGTACAAGAAACCCTTGTGAATAGTGCATACTGTAAATTCATATCATAACAAAACCATTTCCCATCAATATATTTAGAGATGTGTTAGATTGGTTTTGTAAAATGTTATATTCAAGTTGTACAATTTGTTAGTATGGTTTGGTGGGTGGATTAGAGAAAATGTTGACGTGAATGTCAGCTGTcatgaaaatgtatatttcaaaTGAATATTTCCAATAAAATATAGTTTTCTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU532965 lncRNA upstream 2730 6658409 ~ 6708164 (+) True G468878
TU532998 lncRNA upstream 8135 6697372 ~ 6702759 (+) True G468897
TU532972 lncRNA upstream 45105 6665101 ~ 6665789 (+) True G468883
TU532959 lncRNA upstream 61655 6648684 ~ 6649239 (+) True G468875
TU532930 lncRNA upstream 117245 6593024 ~ 6593649 (+) True G468855
TU533028 lncRNA downstream 22606 6735697 ~ 6756156 (+) True G468920
TU533038 lncRNA downstream 59459 6772550 ~ 6772965 (+) False G468929
TU533040 lncRNA downstream 59459 6772550 ~ 6772965 (+) True G468929
TU533042 lncRNA downstream 61943 6775034 ~ 6781668 (+) True G468930
TU533015 lncRNA downstream 81324 6794415 ~ 6795906 (+) True G468907
XM_021605152.2 mRNA upstream 18347 6682907 ~ 6692547 (+) True ydjc
XM_021605151.2 mRNA upstream 101050 6608921 ~ 6609844 (+) True LOC110525188
XM_036979284.1 mRNA upstream 222288 6482012 ~ 6488606 (+) True LOC118964815
XM_036979285.1 mRNA upstream 282755 6423141 ~ 6428139 (+) True LOC110518225
XM_036979286.1 mRNA upstream 479494 6224254 ~ 6231400 (+) False LOC110510500
XM_021605155.2 mRNA downstream 6789 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979295.1 mRNA downstream 37890 6750981 ~ 6771402 (+) True LOC110525076
trnae-uuc mRNA downstream 38637 6751728 ~ 6751803 (+) True trnae-uuc
XM_036979158.1 mRNA downstream 175758 6888849 ~ 6895793 (+) False LOC118964793
XM_036979300.1 mRNA downstream 194517 6907608 ~ 6909956 (+) False LOC110525195
TU532983 other upstream 36507 6672508 ~ 6674387 (+) False G468887
TU533014 other downstream 6834 6719925 ~ 6741493 (+) True ccl19a.1
TU533217 other downstream 639095 7352186 ~ 7352578 (+) True G469048
TU533868 other downstream 895226 7608317 ~ 7643790 (+) True LOC110525210
TU534692 other downstream 1500189 8213280 ~ 8217274 (+) False G470292
TU535014 other downstream 2096882 8809973 ~ 8810943 (+) True G470599

Expression Profile