RNA id: XM_036979295.1


Basic Information

Item Value
RNA id XM_036979295.1
length 5925
RNA type mRNA
GC content 0.53
exon number 39
gene id LOC110525076
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6750981 ~ 6771402 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGTACGGACGCTGAGATGCAAATCTACGGCAAGGCTGCCATATACCTCCGTAAGCCtgagaaggagaggatggaggcaCAAGCCGCACCCTTTGACTCAAAGAACGCTTGTTATGTGTCAGACGTCAAAGAGCTGTACCTTAAGGGTTTGGTCACTGACAGGGCCGACGGAAAGTGTACTGTGACAGTCACCAATCCCGACGGCACCAAACAGGAAGGAAAAGAGTTCAAGGAAGCAGACGTCTACCAGATGAACCCCCCTAAGTACGACAAGATTGAGGACATGGCCATGATGACCTACCTGAATGAAGCCTCTGTGTTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTATACCTACTCTGGGCTCTTCTGTGCCACGGTGAACCCCTACAAGTGGCTTCCTGTGTACGACATGGAGGTTGTCAACGCCtacagagggaagaagaggatggAGGCTCCACCCCATATCTTCTCCGTCTCTGACAACGCCTTCCAGTTCATGCAGATTGATAACGAGAACCAGTCCGTCCTGATTACTGGAGAATCCGGTGCAGGAAAGACTGTCAACACCAAGCGTGTCATTCAGTACTTTGCCACCATTGCAGTGTCTGGCGCCAAGAAGGAAGTAGACCCCAGCAAAATGCAGGGGTCTCTTGAGGATCAGATCATTGCTGCTAACCCTCTGCTGGAGGCTTACGGTAATGCCAAGACAGTGAGGAATGACAACTCATCTCGCTTTGGTAAATTCATCAGGATTCACTTCCAAGGAGGAAAACTGGCTAAAGCTGACATTGAGACCTacctgcTAGAGAAGTCCAGGGTGTCCTTCCAGCTGCCCGATGAGAGAGGCTACCACATCTTCTTCCAGATGATGACCAACCACAAACCTGAGATAGTTGAAATGTCACTCATCACCACCAACCCCTACGACTTCCCCATGTGCAGTCAGGGACAGATCACTGTGGCCAGCATCAACGACAAGGAAGAGCTGGATGCCACAGACGATGCCATTACAATCCTGGGCTTCACTAATGAGGAGAAGGTGGGCATCTACAAGCTGACAGGAGCTGTACTGCACCATGGAAACTTGAAATTCAAGCAGAAGCAGCGTGAGGAGCAGGCCGAGCCAGACGGCACAGAGGTGGCTGATAAAATCGCCTACCTGCTGGGCCTGAACTCCGCTGAGATGCTGAAGGCTCTGTGCTACCCCAGAGTGAAGGTCGGCAACGAGTATGTGACTAAGGGACAGACCGTGCCTCAGGTTAATAACTCAGTCTCGGCTCTGGCCAAGTCCATCTATGAGAGGATGTTCCTGTGGATGGTCATCCGTATCAACGAGATGTTGGACACCAAGAATCCAAGGCAGTTCTACATCGGCGTGTTGGACATTGCCGGGTTTGAGATCTTTGATTACAACAGCATGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAacagtttttcaaccacaccatgtTCGTCCTGGAACAAGAGGAGTACAAGAAGGAGGGAATCGTCTGGGCCTTCATTGACTTCGGCATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCATTGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGTCTTCAGACACTACCTTCAAGGACAAACTGTACTCCCAGCATCTTGGCAAAACCAAGGCGTTTGAGAAGCCCAAGCCTGCCAAAGGCAAGGCAGAGGCCCACTTCTCCCTGGTGCACTACGCCGGAACTGTGGACTACAACATCACTGGCTGGCTGGAGAAGAACAAGGACCCCCTGAACGATTCAGTTATTCAGCTGTACGGGAAGTCATCAGTCAAACTGTTGGTCGCCCTGTATCCCACAGCTCCACCTGAGGATAATACCAAGAAGGGAGGCAAGAAGAAGGGTGGCTCCATGCAGACGGTGTCGTCCCAGTTCAGGGAGAACTTACATAAGCTGATGACCAACTTGAGGAGCACTCATCCTCACTTTGTGCGCTGCCTGATCCCCAACGAGTCAAAGACTCCAGGTCTGATGGAGAACTTCCTGGTTATCCACCAGCTCAGGTGTAATGGTGTTCTGGAGGGTATCAGGATCTGCAGGAAGGGCTTCCCCAGCAGAATCATCTACGCTGACTTCAAGCAGAGGTACAAAGTACTGAATGCCAGTGTCATCCCCGAGGGCCAGTTCATGGACAACAAGAAGGCTTCTGAGAAGCTGCTTGGgtccattgatgtgaatcacgaTGActacaagtttggacacaccaagGTGTTCTTCAAAGCCGGTCTGCTGGGTgtcctggaggagatgagagacgaGAAGCTGGCCTCTCTGGTCGGCATGGTCCAGGCTCTCAGCCGTGGATTCCTCATGAGGAGAGAGTTCACcaagatgatggagaggagAGATTCCGTCTTCTCCATCCAGTACAACATCCGTTCATTCATGAATGTGAAAACCTGGCCATGGATGAAGTTGTACTTCAAGATCAAGCCCCTGCTGCAGAGCGCTGAGACGGAGAAGGAGCTGGCCAACATGAAGGAGAACTATGAGAAGATGACGTCGGACCTGGCCAAGGCTCTGGCCACCAAGAAGCATTTGGAGGAGAAGTTAGTGGCCCTGGTGCAGGAGAGGGCAGACCTGGCGCTTCAAGTCTCATCTGATTCAGAGAATCTGAACGATGCTGAGGAAAGGTGTGAGGGGCTCATCAAGAGCAAGATCCAGCTGGAGGCCAAACTCAAAGAGACGACCGAGAGgctggaggacgaggaggagatgAATGCTGAGTTGACTGCCAAGAAGAGGAAGCTGGAGGATGagtgctctgagctgaagaaggaCATTGATGACCTGGAGCTCACCTTGGCCAAAGTGGAGAAGGAGAAGCACGCCACCGAAAACAAGGTTAAAAACCTGACAGAGGAGATGGCGTCTATGGATGAGAGTGTTGCCAAGCTGACCAAGGAGAAGAAAGCCCTCCAAGAGGCCCACCAGCAGACACTGGATgacctgcaggcagaggaggacaAAGTCAACACTCTGACCAAGTCCAAGACCAAGCTGGAACAGCAAGTGGACGACCTTGAGGGTTCTCTGGAGCAAGAGAAGAAGCTCCGTATGGACCTTGAGAGAGCCAAGAGAAAGCTGGAGGGAGATCTGAAACTGGCCCAGGAGTCCATAATGGACCTGGAGAATGACAAGCAGCAATCTGATGAGAAAATCAAGAAGAAGGACTTTGAGACCACTCAGCTCCTCAGCAAGATAGAGGATGAGCAGTCTCTGGGAGCTCAGCTGCAGAAGAAGATCAAGGAACTCcagGCCCGTattgaggagctggaggaggaaatTGAGGCTGAGCGTGCTGCCAGGGCTAAGGTTGAGAAGCAGAGGGCCGATCTCTCCAGGGAACTTGAGGAGATCAGCGAGAGGCTGGAGGAGGCCGGAGGCGCCACTGCTGCTCAGATTGAGATGAACAAGAAGCGCGAGGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACTTTGCAGCATGAGGCCACAGCCGCCGCTCTGCGCAAGAAGCAGGCCGACAGTGTGGCTGAGCTCGGGGAGCAGATCGACAACCTTCAACGTGTCAAGCAGAAGCTGGAGAAAGAGAAGAGTGAGTACAAGATGGAGATTGATGACCTCTCCAGCAACATGGAGGCCGTCGCCAAGGCTAAGGGCAATCTGGAGAAGATGTGCCGTACTCTTGAGGACCAGCTGAGCGAGCTCAAGACTAAGAATGATGAGAATGTTCGCCAGGTCAACGACATCAGCGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGACgccagctggaggagaaggaaGCCCTGGTGTCTCAGCTGACAAGAGGCAAACAGGCCTTCACCCAGCAGGTTGAGGAGATGAAGAGACTGATTGAGGAGGAGGTCAAGGCTAAAAACGCACTGGCCCACGGTGTCCAGTCTGCCCGCCATGACTGTGATCTCCTGAGAGAGCAGTTTGAAGAGGAGCAGGAGGCCAAGGCAGAGCTGCAGCGCGGCATGTCCAAGGCCAACAGCGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCCATCCAGCGCACAGAAGAGCTGGAGGAGGCCAAGAAGAAGCTGGCCCAGCGTCTGCAGGAGGCTGAGGAGACCATTGAGGCGACCAACTCTAAGTGCGCCTCCCTGGAGAAGACCAAGCAGAGGctgcagggagaggtggaggacctCATGATTGACGTTGAGAGAGCCAACGCAATGGCCGCCAACCTTGACAAGAAGCAGAGGAACTTTGACAAGGTTCTGGCAGAGTGGAAGCAGAAGTACGAGGAGGGCCAGGCTGAGCTGGAAGGAGCTCAGAAGGAAGCTCGCTCTATGAGCACTGAACTCTTCAAGATGAAGAACTCCTACGAGGAGGCTCTGGATCATCTGGAGActctgaagagagagaacaagaacctGCAACAGGAGATCTCTGACCTGACTGAGCAGATTGGAGAGACTGGCAAGAGCATCCATGAGCTGGAGAAGGCCAAGAAGACCGTGGAGACAGAGAAGTCTGAGATCCAGACCGCTCTGGAGGAGGCTGAGGGCACACTGGAGCACGAGGAATCCAAGATTCTGCGTGTGCAGCTGGAGCTGAACCAGATCAAGGGTGAGGTGGACAGGAAGATCGCTGAGAAGGACGAGGAGATGGAGCAGATCAAGAGGAACAGCCAGAGGGTGGTTGACTCCATGCAGAGCACCCTGGACTCTGAGGTCAGGAGTAGGAATGACGCCCTGAGggtgaagaagaagatggagggagacctGAACGAGATGGAGATCCAGCTGAGCCACGCCAACAGGCAGGCCGCTGAGTCCCAGAAACAGCTGAGGAACATCCAGGGACAGTTCAAGGATGCCCAAATGCACCTTGATGACGCCGTCCGTGCCTCAGAGGACATGAAGGAGCAGGCAGCCATGGTGGAGCGCAGAAACGGCCTGATGATGGCTGAAATTGAGGAGCTGAGAGTTGCtctggagcagacagagagaggccgcAAAGTGGCTGAGACTGAGCTGGTAGACGCCAGCGAGCGCGTCGGACTGTTGCACTCCCAGAACACCAGCCTTCTGAACTCCAAGAAGAAGCTGGAGACTGACCTGGTGCAGGTGCAGGGAGAGGTGGACGACATCGTCCAGGAGGCCAGAAACGCAGAGGAGAAGGCCAAAAAGGCCATCACTGACGCGGCCATGATGGCcgaggagctgaagaaggagcaggacaccagctctcacctggagaggatgaagaagaacctGGAGGTCACAGTCAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGAATCTGGCCATGAAGGGAGGCAAGAAGCAGCTCCAGAAACTGGAGTCCAGGGTGCGTGAGCTGGAGACTGAGGTGGAGGCCGAGCAGAGAAGAGGTGTAGACGCGGTCAAGGGAGTCCGCAAGTATGAGCGCAGAGTCAAGGAGCTCACTTACCAGACTGAGGAGGATAAGAAGAACGTTGGCAGACTTCAGGACCTGGTAGATAAGCTGCAGATGAAAGTCAAGGCCTATAAGAGGCAGGCTGAGGAAGCGGAGGAAGCATCCAACCAGCACATGTCTAAGTTCAGGAAGGTTCAGCACGAGCTGGAGGAGGCTGAGGAGCGTGCTGACATCGCTGAGACTCAGGTCAACAAGCTCAGAGCCAAGAGCCGTGACAGTGGAAAGGGCAAAGAAGCTGCTGAATAAACGAAGATCAAACTATTGAAGATGAAAGTCTTTTCATTTTCCTGTGTTGcataaaatatgattttcatggTAAAATGTTGAGCATTGATTAAAAACACTTAGGCCTACGTA

Function

GO: NA

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532975 lncRNA upstream 12973 6669450 ~ 6738008 (+) True G468885
TU532965 lncRNA upstream 42817 6658409 ~ 6708164 (+) True G468878
TU532998 lncRNA upstream 48222 6697372 ~ 6702759 (+) True G468897
TU532972 lncRNA upstream 85192 6665101 ~ 6665789 (+) True G468883
TU532959 lncRNA upstream 101742 6648684 ~ 6649239 (+) True G468875
TU533038 lncRNA downstream 1148 6772550 ~ 6772965 (+) False G468929
TU533040 lncRNA downstream 1148 6772550 ~ 6772965 (+) True G468929
TU533042 lncRNA downstream 3632 6775034 ~ 6781668 (+) True G468930
TU533015 lncRNA downstream 23013 6794415 ~ 6795906 (+) True G468907
TU533054 lncRNA downstream 28778 6800180 ~ 6800514 (+) False G468938
XM_021605155.2 mRNA upstream 9488 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979293.1 mRNA upstream 37890 6710894 ~ 6713091 (+) False ccl19a.2
XM_021605152.2 mRNA upstream 58434 6682907 ~ 6692547 (+) True ydjc
XM_021605151.2 mRNA upstream 141137 6608921 ~ 6609844 (+) True LOC110525188
XM_036979284.1 mRNA upstream 262375 6482012 ~ 6488606 (+) True LOC118964815
XM_036979158.1 mRNA downstream 117447 6888849 ~ 6895793 (+) False LOC118964793
XM_036979300.1 mRNA downstream 136206 6907608 ~ 6909956 (+) False LOC110525195
XM_036979302.1 mRNA downstream 136955 6908357 ~ 6909956 (+) False LOC110525195
XM_036979299.1 mRNA downstream 140418 6911820 ~ 6914445 (+) True LOC118964818
XM_036979303.1 mRNA downstream 162212 6933614 ~ 6935571 (+) True LOC118964819
TU533014 other upstream 9488 6719925 ~ 6741493 (+) True ccl19a.1
TU533001 other upstream 37944 6710688 ~ 6713037 (+) False ccl19a.2
TU533217 other downstream 580784 7352186 ~ 7352578 (+) True G469048
TU533868 other downstream 836915 7608317 ~ 7643790 (+) True LOC110525210
TU534692 other downstream 1441878 8213280 ~ 8217274 (+) False G470292
TU535014 other downstream 2038571 8809973 ~ 8810943 (+) True G470599
TU535229 other downstream 2451949 9223351 ~ 9225513 (+) True G470770

Expression Profile