RNA id: XM_036979158.1


Basic Information

Item Value
RNA id XM_036979158.1
length 1431
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC118964793
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6888849 ~ 6895793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGTAAACAGAAGcaaaaagagatggaagaggaaatagaacaggagagagagatggaagaaaagCAGGAAGTGATtaaggaagcagaggaagagtacagggaaagagaagagagaggaaaggaagtaaGCATGAAGAAACATGTAGTAGTTAATGTTAAAGCAAAAGCACGGGAAGTCTTCAATAGGCGtaaagagaggaggttagaagTGTTGAAGGGGGAACGAGAACACATAGAAAGAGGACAACAaatcaggagggagaaggaggaaagacGGCTGGAGATggaaagaaaacaggagagggcAAGACAACAAGAGGAGCAGGATAAAAAACGAGAGATTGAAATTGCTAGACAGAAAGAAATGTTGAGactaagagaggaggagaggcagagagaggaagagagagaggaggagagaaagaaagccaTTAAATGCCTTTTATctttaatcagagagagagaagaaataatACAGGCAAAAAAAAGAGAGGAGATGGTGGAAGAGGAAAGAAGGGAGATCCTTGAGTACAAGAGGGGTgagttagaggaggaggaaaaagaagatgacaaggaggACATTCTCCCACCCGATAAAAGTATCCGAAGGAGAGCCGTGGGCTGGGTGAATAAAAAATGGGAGAAGAGGAAcctcagaaagatagagagaacgtatcagagagaggctgaggagggccATAAGATCGTCCACATAGCCATCCCTGGACACACAAGGCTAACATCCACCATGAcccgggcagagagagagagggagaagaggaaggagctGCTGAAGgctgaggagagaaggaagaagatGGAGGATTTCAATAAGCAGTGGAGAGAGCGGTCCCTGCTTAAAAAACAGACTCATCAAcaactgaaggaggagagggagaggatgaaggaaAACTACCTGGAGCAGATGAATCTGGAGGCTGATGCTCAAATCAACAACCGGTGTCTAACCACCCAACACAGCCACGATTACAACCACGGTCAGGAGTTGCCCTGGGTCGCCACAGGCCAACAAGTAAGCCAAGAGCCCACTGGATCTGCTGATGGCCACCAGGAAAGGCCAAGGAGGCAACAGGCATGGGCAGAGAACCAGGAGGGGAGTTCAGAGAACCAGCAGGAGGGGCCAGAGAACCATCAGGGGGGGCCAGACAGCCAGCAGCTAGAAGCTCCAGAAGAGGTTGAAACATCAGAGCGAATATCCAAGACAAAGAAAAAGCCAAGCATCTGGAAGAAAATTAGGATGAGTCAACAAGTGATGAGCCAGATCAACCAATCAACGTCACTGCAGCTGTTCTACCCACCACCCCCACTGCTCTTCCTCCACCACCaacctcatcctcttctcctgttcAACTCATTTGTCGCCCCACTAGAAAGGACTAGTgcatacagttgatgtcggaagtttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU533098 lncRNA upstream 5342 6881941 ~ 6883507 (+) True G468975
TU533087 lncRNA upstream 24347 6856866 ~ 6864502 (+) True G468966
TU533072 lncRNA upstream 66699 6821895 ~ 6822150 (+) True G468953
TU533071 lncRNA upstream 68786 6819498 ~ 6820063 (+) True G468952
TU533069 lncRNA upstream 71520 6816466 ~ 6817329 (+) False G468950
TU533115 lncRNA downstream 212 6896005 ~ 7249085 (+) False G468982
TU533116 lncRNA downstream 212 6896005 ~ 6956291 (+) True G468982
TU533130 lncRNA downstream 11551 6907344 ~ 6929358 (+) False LOC110525195
TU533131 lncRNA downstream 11551 6907344 ~ 6928307 (+) True LOC110525195
TU533137 lncRNA downstream 21613 6917406 ~ 6952524 (+) True G468993
XM_036979295.1 mRNA upstream 117447 6750981 ~ 6771402 (+) True LOC110525076
trnae-uuc mRNA upstream 137046 6751728 ~ 6751803 (+) True trnae-uuc
XM_021605155.2 mRNA upstream 147356 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979293.1 mRNA upstream 175758 6710894 ~ 6713091 (+) False ccl19a.2
XM_021605152.2 mRNA upstream 196302 6682907 ~ 6692547 (+) True ydjc
XM_036979300.1 mRNA downstream 11815 6907608 ~ 6909956 (+) False LOC110525195
XM_036979302.1 mRNA downstream 12564 6908357 ~ 6909956 (+) False LOC110525195
XM_036979299.1 mRNA downstream 16027 6911820 ~ 6914445 (+) True LOC118964818
XM_036979303.1 mRNA downstream 37821 6933614 ~ 6935571 (+) True LOC118964819
XM_036979159.1 mRNA downstream 52223 6948016 ~ 6950249 (+) True LOC118964794
TU533014 other upstream 147356 6719925 ~ 6741493 (+) True ccl19a.1
TU533002 other upstream 175812 6710688 ~ 6713037 (+) False ccl19a.2
TU533217 other downstream 456393 7352186 ~ 7352578 (+) True G469048
TU533868 other downstream 712524 7608317 ~ 7643790 (+) True LOC110525210
TU534692 other downstream 1317487 8213280 ~ 8217274 (+) False G470292
TU535014 other downstream 1914180 8809973 ~ 8810943 (+) True G470599
TU535229 other downstream 2327558 9223351 ~ 9225513 (+) True G470770

Expression Profile