RNA id: XM_036979300.1


Basic Information

Item Value
RNA id XM_036979300.1
length 1590
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110525195
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6907344 ~ 6929358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGAAATAATAAATAGTGGGGAGAGAGTTGTGATTGAATGTTTGTTTGTACAGTTATGGCTGTAATGTTATTATTTTGTGTTCTCACTAAACACCCACATTTGTATTTGTGTGGGAAATGTTTGTAGGCTATGGTGTTTGCTGTTTGTATTTCATTGAACTTTAGGCCCATACAAAGACAAATCACACAACATAGACTACCAAATAACCTTAGGCAAAAATACACGAAATAAAAGTCAAGTGAAAATAGTTATAAATGACTTTATCAATTATGAGTAGCTAAACATTATCGACTTTTGGACACTGATGCGCAGGAGAACCCCTAGCTGTCAATCAAGCAGGCGCGGTGAACGGATTATGACGCTCAAGCGTTCCAAATGACGCAACAATACAGCTCCAGACCAGAGAAAGTTAATGCCGAGGATATTATTCGGTTCAACACTAAAACTGAGGTTTGACACGTGTGATTTGAGGCTAGAGCTTGAGGACTCAACTCTGAAGACTGTTTCTGAATTCACTGACCTGAAATAAAACTTGTAGACCTTTCCTGCAGTCTCTGAGGAGATGGACACCTCTTCTTCTTCTGGACGATCTCCGTCTCCTACTGGGACTGTCTTCTTACCCCCTCCTATCATGTGGAACAGTCTCTACAAGCAGGCAGAGATGGAGGTTTACTTcccgagagaagagaagaagacctGTACAGAGAAGGAAGCCCACATGCTTGAGTTGATGGGGAAGGATCAAACGATCCGAAATCAGAAGAAGGAGATGGGCAGACTTCAAGTGTGCCTCTGGGAGGaggaaaagaagaagaggaatGGTGGAACGGAGAAGGACAAGATCATTGAACAATTACAGTCTGAGACAGACCACCTCAGAGCCCTTTTAAAAgatgaaaggaggagaagaagagtagAAAGGGGTATACTGAAAGAGTGGAAGGCTGAGATCctgagactgagggaggcagagagccagagggaggcagagagccagagggagtcagagagccagagggaggcagagagccagagagatgcagaaagacagagagaagcagagagacagagagaagcagagagacagagagaagcaaagagacagagagaagcagagagacagagggaggcagagagagagagggaagcagagagacagagggaggcagagagacagagagaagcagagagacagagggaagcagagagacagagggaagcagagagagccaCAGAAGCAATGGAGCACCAGAGAAAACTGCAGGAGATCCACAGACTCAACCAACTGCTGGATCTACTGATGGTGGACCTACAACTGGCCCACGTAAGACATGTCATTGTTATTATTAAAAGGCAGTGTATATTTACCCAGCTGAAAATGAATAGTGGCAGACAGCGGTACGCTAACCCAATGTTAACTTTCATTCCtttccttaacccttaccttaacctcactgaaactatacctaacctttaccttaacccaaccctaggtCCTGAACCTAACCATCATTTATCTCAACCCCTATGCCTTTCTTCTGCCGGTTGAATATCCACTTCCTTATTAACGTCattcctgttgttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU533111 lncRNA upstream 11861 6891361 ~ 6895747 (+) True LOC118964793
TU533098 lncRNA upstream 24101 6881941 ~ 6883507 (+) True G468975
TU533087 lncRNA upstream 43106 6856866 ~ 6864502 (+) True G468966
TU533072 lncRNA upstream 85458 6821895 ~ 6822150 (+) True G468953
TU533071 lncRNA upstream 87545 6819498 ~ 6820063 (+) True G468952
TU533137 lncRNA downstream 7450 6917406 ~ 6952524 (+) True G468993
TU533139 lncRNA downstream 14490 6924446 ~ 6958179 (+) True G468995
TU533129 lncRNA downstream 14701 6924657 ~ 6959144 (+) True G468988
TU533133 lncRNA downstream 30831 6940787 ~ 6959762 (+) False G468990
TU533142 lncRNA downstream 32727 6942683 ~ 6962381 (+) True G468998
XM_036979158.1 mRNA upstream 11815 6888849 ~ 6895793 (+) False LOC118964793
XM_036979295.1 mRNA upstream 136206 6750981 ~ 6771402 (+) True LOC110525076
trnae-uuc mRNA upstream 155805 6751728 ~ 6751803 (+) True trnae-uuc
XM_021605155.2 mRNA upstream 166115 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979293.1 mRNA upstream 194517 6710894 ~ 6713091 (+) False ccl19a.2
XM_036979299.1 mRNA downstream 1864 6911820 ~ 6914445 (+) True LOC118964818
XM_036979303.1 mRNA downstream 23658 6933614 ~ 6935571 (+) True LOC118964819
XM_036979159.1 mRNA downstream 38060 6948016 ~ 6950249 (+) True LOC118964794
XM_036979305.1 mRNA downstream 55755 6965711 ~ 6968333 (+) False LOC110525083
XM_036979304.1 mRNA downstream 55755 6965711 ~ 6972578 (+) True LOC110525083
TU533014 other upstream 166115 6719925 ~ 6741493 (+) True ccl19a.1
TU533002 other upstream 194571 6710688 ~ 6713037 (+) False ccl19a.2
TU533217 other downstream 442230 7352186 ~ 7352578 (+) True G469048
TU533868 other downstream 698361 7608317 ~ 7643790 (+) True LOC110525210
TU534692 other downstream 1303324 8213280 ~ 8217274 (+) False G470292
TU535014 other downstream 1900017 8809973 ~ 8810943 (+) True G470599
TU535229 other downstream 2313395 9223351 ~ 9225513 (+) True G470770

Expression Profile