Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031908 |
| length | 1301 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 6 |
| gene id | XLOC_016175 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 9684305 ~ 9696283 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004791 | thioredoxin-disulfide reductase activity | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030327-6 | Predicted to enable thioredoxin-disulfide reductase activity. Predicted to be involved in cell redox homeostasis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including alar plate midbrain region; axis; digestive system; mesoderm; and sensory system. Orthologous to human SELENOT (selenoprotein T). |
| ensembl_id | ENSDART00000165712 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033775 | lncRNA | downstream | 265217 | 9330246 ~ 9419088 (-) | True | XLOC_016168 |
| TCONS_00033774 | lncRNA | downstream | 843421 | 8835922 ~ 8840884 (-) | True | XLOC_016165 |
| TCONS_00031883 | lncRNA | downstream | 1190166 | 8491405 ~ 8494139 (-) | True | XLOC_016159 |
| TCONS_00031881 | lncRNA | downstream | 1190293 | 8491082 ~ 8494012 (-) | False | XLOC_016159 |
| TCONS_00033351 | lncRNA | upstream | 50154 | 9746437 ~ 9747547 (-) | False | XLOC_016178 |
| TCONS_00031912 | lncRNA | upstream | 50154 | 9746437 ~ 9748047 (-) | False | XLOC_016178 |
| TCONS_00033350 | lncRNA | upstream | 50154 | 9746437 ~ 9748084 (-) | False | XLOC_016178 |
| TCONS_00033776 | lncRNA | upstream | 50154 | 9746437 ~ 9748161 (-) | False | XLOC_016178 |
| TCONS_00033778 | lncRNA | upstream | 50154 | 9746437 ~ 9748216 (-) | False | XLOC_016178 |
| TCONS_00031907 | mRNA | downstream | 37448 | 9629558 ~ 9646857 (-) | True | XLOC_016174 |
| TCONS_00031906 | mRNA | downstream | 58757 | 9621289 ~ 9625548 (-) | True | XLOC_016173 |
| TCONS_00031905 | mRNA | downstream | 76426 | 9592319 ~ 9607879 (-) | True | XLOC_016172 |
| TCONS_00031904 | mRNA | downstream | 140144 | 9529523 ~ 9544161 (-) | True | XLOC_016171 |
| TCONS_00031901 | mRNA | downstream | 157095 | 9513160 ~ 9527210 (-) | False | XLOC_016170 |
| TCONS_00031910 | mRNA | upstream | 5770 | 9702053 ~ 9744081 (-) | True | XLOC_016177 |
| TCONS_00031913 | mRNA | upstream | 50211 | 9746494 ~ 9748039 (-) | False | XLOC_016178 |
| TCONS_00031916 | mRNA | upstream | 93528 | 9789811 ~ 9818711 (-) | False | XLOC_016179 |
| TCONS_00031918 | mRNA | upstream | 93550 | 9789833 ~ 9818673 (-) | False | XLOC_016179 |
| TCONS_00031917 | mRNA | upstream | 93550 | 9789833 ~ 9818673 (-) | False | XLOC_016179 |
| TCONS_00031903 | other | downstream | 140144 | 9529488 ~ 9544161 (-) | False | XLOC_016171 |
| TCONS_00031900 | other | downstream | 277630 | 9406558 ~ 9406675 (-) | True | XLOC_016169 |
| TCONS_00031895 | other | downstream | 999372 | 8680942 ~ 8684933 (-) | True | XLOC_016164 |
| TCONS_00031892 | other | downstream | 1049173 | 8634240 ~ 8635132 (-) | True | XLOC_016162 |
| TCONS_00031853 | other | downstream | 2775624 | 6908662 ~ 6908681 (-) | True | XLOC_016140 |
| TCONS_00031914 | other | upstream | 50575 | 9746858 ~ 9746993 (-) | False | XLOC_016178 |
| TCONS_00031915 | other | upstream | 51019 | 9747302 ~ 9747431 (-) | True | XLOC_016178 |
| TCONS_00031958 | other | upstream | 1208779 | 10905062 ~ 10905179 (-) | True | XLOC_016199 |
| TCONS_00031983 | other | upstream | 1960270 | 11656553 ~ 11662923 (-) | True | XLOC_016210 |
| TCONS_00031991 | other | upstream | 2528140 | 12224423 ~ 12224539 (-) | True | XLOC_016216 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU26310 | True | 327 | TUCP | 0.43 | 2 | CI01000003 | 1864608 ~ 1866921 (+) |
| rainbow trout (Oncorhynchus mykiss) | TU158548 | True | 335 | lncRNA | 0.36 | 1 | NC_048566.1 | 36905465 ~ 36905799 (+) |
| rainbow trout (Oncorhynchus mykiss) | TU2430274 | True | 1175 | lncRNA | 0.49 | 6 | NC_048592.1 | 29265047 ~ 29269424 (+) |
| eurasian perch (Perca fluviatilis) | TU158548 | True | 1861 | lncRNA | 0.42 | 6 | NC_053122.1 | 24863027 ~ 24870087 (+) |
| eurasian perch (Perca fluviatilis) | TU186879 | True | 1830 | lncRNA | 0.41 | 2 | NC_053124.1 | 36184037 ~ 36193304 (+) |
| bowfin (Amia calva) | TU71005 | False | 1092 | lncRNA | 0.47 | 6 | CM030126.1 | 37281218 ~ 37285365 (-) |
| mexican tetra (Astyanax mexicanus) | TU186879 | False | 1209 | lncRNA | 0.48 | 6 | NC_035912.1 | 3115442 ~ 3119483 (+) |
| mexican tetra (Astyanax mexicanus) | TU158548 | True | 764 | lncRNA | 0.48 | 9 | NC_035909.1 | 41356722 ~ 41359883 (-) |
| mexican tetra (Astyanax mexicanus) | TU71005 | True | 1255 | lncRNA | 0.35 | 2 | NC_035902.1 | 16622749 ~ 16677399 (-) |
