RNA id: XM_036979380.1


Basic Information

Item Value
RNA id XM_036979380.1
length 3230
RNA type mRNA
GC content 0.51
exon number 12
gene id bmpr1ba
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 9478107 ~ 9635081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGAGGTTTGAGAACCATTAACCATGCTTTCTTTAAAAGCTGTTTTCTTAACTGCAATTCTTCAAGACGTCGGTAGTTGGAGCGAAGGAACGGAGCATTTCTTAAGAAGTGTAACGCTTTTTTGAGAGGCAAGGTAGAGAGGTTGTTGACTCAAAAATGCGAACGTGAGACAACTGCAGAACGGAAAGACGGACGGTCGGGTCCTCTAGTGTTGAGAAGAGTATCATCTGTAGTGGATTCCCGAGGTGCTGACTACAAAAGTGTTCTATCATTCTGAGAGTAAGaGTGGAGTTTCTCATAccgtggacagagaggagacggcGCATTCCCCAgtctgagcacacacacacacacaggggggagAGCGAGAACCAGGGAGTTGAGACATTGTGTGGAGGCCGGAGCCTGAGGGATTTCCCCCCTCATCTGTAGCCCGGCTAGCAATCGAGACACCATGCTGGTGCTGTGGGAAGGAGCACACTGGAGCCATCTCATCTTGCTTGGACTTTTGTCTCTGCGCTACCAGACCTACGCTAACGTTCTGGACAGTATGTTGCTGAGGACTTTGGGGAAGGCGGTGGTGGACAGTGAAAAGGACGCCAGTGGGAGCACAGCCCCAGCCCTGCCCCAGCGACAGCTCTGGTGTTACTGCTATCACCACTGTCCTGAGGACTCCACCAACAACACCTGCAGGACGGATGGGTACTGCTTCACCATGGtggatgaagaggagggaggggtccCTGTCCTCACATCAGGATGTCTGGGTCTGGTGGGATCAGAGTTCCAGTGCAGGGACACAGGCAACTCCCGACTGAGAAGATCCCTGGAGTGCTGTACTGACCAGGACTACTGCAACAAAGACCTGCACCCCACCTTGCCCCCACTCAAAACACCCAatTATGCAGATGGGAACATTCACCACATGGCTCTGCTAATCTCCGTCACTGTGTGCAGCATCATCCTGGCTCTCATCGTTATGTTCTGCTACTTCAGGTACAAGCGCCAGGAGTCTGGGCCGCGCTACAGCATTGGTCTGGAGCAGAATGAGTCCTACATCCCTCCGGGAGAGTCTCTCAGAGACCTTATAGAACAGTCCCAGAGttcaggcagtggctcaggtctCCCCCTGCTGgTGCAGCGCACCATAGCCAAGCAGATTCAGATGGTTAAGCAGATTGGAAAGGGCCGCTACGGAGAGGTGTGGATGGgcaagtggagaggagagagggtggccGTCAAAGTCTTCTTCACCACCGAAGAGGCCAGCTGGTTCAGAGAGACTGAGATTTACCAGACTGTCCTCATGAGACACGAGAACATACTGTGCTTCATAGCGGCTGACATCAAGGGAACAGGCTCGTGGACCCAGCTCTACCTGATCACAGACTACCATGAGGGTGGCTCTCTGTACGACTACCTCAAGTCCACCACGCTGGACACCAAGGCCATGCTGCGACTGGCCTACTCCTCAGTCTCGGGCCTCTGTCACCTCCACACAGAGATCTTTGGTACCCAGGGCAAGCCGGCCATCGCCCACAGAGACCTGAAGAGCAAGAACATCCTGGTGAAGAAGAATGGAGCCTGCTGCATCGCTGACCTGGGCCTGGCCGTCAAATTCatcagTGACACCAACGAGGTGGACATCCCTCCCAACACCAGGGTGGGCACCAAGCGCTACATGCCCCCAGAAGTCCTGGATGAGAGCCTCAACAGGAACCACTTCCAGTCCTACATCATGGCCGACATGTACAGCTTCGGCCTCATCCTCTGGGAGATCGCCAGGCGCTGTGTCTCAGGAGGTATTGTAGAGGAGTACCAGCTACCGTACCATGACCTGGTGCCCTCTGACCCCTCGTATGAGGACATGAGAGAGGTGGTCTGCATCAAGAGGTTACGACCTTCCTTCCCCAACCGCTGGACTAGCGACGAGTGCCTTAGGCAGATGGGCAAGTTGATGACGGAGTGTTGGGCCCACAACCCGGCCTCTCGCCTCACGGCACTGCGCGTCAAGAAGACCCTGGCCAAGATGTCCGAGTCTCAGGATATTAAACTGTGATGGCCGGGAGGGACACTCCAGGCGTGGGGGAAACACGTCACCACGGACCGACAGCCAGGGCTCTGCTCCGCTCTACCCACAGTCCTCTGCTGCATGGGGGGTCAGGAGGACCAGAAGCCAGCAGTGCACCACAGGGAGCCTCACCCCGGGCCACGGTCactcagagagaaggagagaaccgCCCGTAACCCCTCGAACTGTCGTGATGAACTACTTGTTTAGATACTGAAGACCTGGGGCAGGTATTGCCTTTTTAAAGCGACCTGCTATGATCATGTTTGGTTGGCTTAGACAAAGAGGACACAAGCCAAGTGGGTTTTATTTGTGCTTTCTGTGAAAGCTGCTCTAGTTTTAGATGATGGGCCAGTGGTggctggaggaagagggaggtggggaACTGCatgaggagggtggagggtgacCCCTTCAGGCGTATCACAGGATGACAGCAGGAGGAATCAGCTGACAATCTGAAGCCATAATCAAGtgttgatttagatttttggggtTATTTATTAGTGCAAACCGTAGAAAAACATTTTGCACCACAAAAGTTtttcaacaaaaacaaacatttcttattggacaatttTAGGTTAGTCCCTCCCCATTTTAGCCAGTTggcttctgtttggttcctagtgaatacacccctgttGTTGTCCAGTAGTTTACCAAGGTAAACCATGGTGTGTCTGGGGTAAAGGGGAGTTTTTTTCTTCACTATGAGTACATTATAAAGTGCTGAGTACTGATTCACTGTGGCCTCATTTGTAAAAGTAGCTTCATTTGTATGTACGCCACAAATAAAGATATTCAAATGATATCAGTTCAAATTCAAATTGTATCGGCAATAAAACATTTAGGTGACAATGTCTTTGGTATTTATCATCTGATTTGACCCTACCAGGGACCCCAGGCACATCACACAGGTTCTTTAGTGACATGGTTAGTTAAAGGGACAGTTCTCCCTTAAGTCAGAATGTTGACGGCGTTTGACCTTAGACCAATAAAAACAACCAATGTATATGAAAACGCCAGAAATATGAAAACAGCAAATATATAaacttgttattttttatttgattaggatccccattaactgttgcgatagttactcttcctggggtccacatgcaACATGAAATAATACAGAACATTTATAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU536067 lncRNA upstream 4322 9473434 ~ 9473785 (+) True G471483
TU536056 lncRNA upstream 44767 9432654 ~ 9433340 (+) True G471472
TU535981 lncRNA upstream 166371 9311423 ~ 9311736 (+) True G471410
TU535977 lncRNA upstream 170121 9307708 ~ 9307986 (+) True G471406
TU535969 lncRNA upstream 176809 9301083 ~ 9301298 (+) True G471398
TU536187 lncRNA downstream 54450 9689531 ~ 9690214 (+) True G471595
TU536254 lncRNA downstream 155188 9790269 ~ 9791152 (+) True G471652
TU536265 lncRNA downstream 185739 9820820 ~ 9821438 (+) True G471661
TU536279 lncRNA downstream 220213 9855294 ~ 9856046 (+) True G471675
TU536316 lncRNA downstream 304439 9939520 ~ 9940024 (+) True G471712
XM_036979372.1 mRNA upstream 237 9351146 ~ 9477870 (+) False pdlim5a
XM_021605212.2 mRNA downstream 725684 10360765 ~ 10365694 (+) True LOC110525237
NM_001124462.1 mRNA downstream 749827 10384908 ~ 10386345 (+) True aptx
XM_021605219.2 mRNA downstream 824556 10459637 ~ 10460645 (+) True LOC110525245
XM_021605220.2 mRNA downstream 841252 10476333 ~ 10479220 (+) True mpeg1.1
XM_036979381.1 mRNA downstream 845049 10480130 ~ 10484335 (+) False prf1.5
TU535218 other upstream 204154 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 252594 9223351 ~ 9225513 (+) True G470770
TU535014 other upstream 667164 8809973 ~ 8810943 (+) True G470599
TU534692 other upstream 1260833 8213280 ~ 8217274 (+) False G470292
TU533868 other upstream 1834317 7608317 ~ 7643790 (+) True LOC110525210
TU537053 other downstream 645225 10280306 ~ 10281123 (+) True G472364
TU537828 other downstream 1643257 11278338 ~ 11279265 (+) True G473070
TU539228 other downstream 2553207 12188288 ~ 12190572 (+) True G474321
TU539852 other downstream 2868679 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 3077225 12712306 ~ 12713298 (+) True G474949

Expression Profile