RNA id: XM_021605212.2


Basic Information

Item Value
RNA id XM_021605212.2
length 3741
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110525237
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 10360765 ~ 10365694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGCAGCAAAATATCGTCCAGTCGTCCGGAATGCTACAATGTACAAGAAGAAGATTGAATAAACTCGCGAGAAGTCCCGGAACCGTTTCTGCTGCTGAGAGAGGTGCATGAAGAAAAGACGAAACACAACAAAGTAAAACTGGCGCGGGCGCTACTTTTAATAATAACTTTTTCATAAATGTATAGTTACAGACCACAGTAACTAACTATTTAAACGTGTGGTATTAATTTAGTTAAATAACGTCGTTGGTAGAATTTCATAATGCCAAGTAGCACATCTTTGTTGGAGACCGAGGAAACTGAGCCGGAGATCCCGCCACTAGTTGTGCATGCATTCGCCGACATAGGCCTGGATGACCACTACAGACACACGGAACAACCCGAAAGCCTTTTGCATCCACGCCCGGTCTCTCATTTCAATGTGCTTGGTGCCGTGCTGGACCTACAGCCTATACAGCACCCCCATCCGACACCGACGGAAGAGGACGAAGAAAGAGCCAATGAAGACGTGTTGGGAGAGGATGATTTCAACAAGACGCTGCTTGTGCAGGCCCAAGGCTCGGGACTAGGCTCTGTTATGCTACCTGGATTGGATACGCCCGAGACACTCTTGCTGTACAATGAGTTTGACCACGGCACACTACAACAGGCTACGGGAATGATGATTTTACCGCCTGTGTATGGAGAGCCTGGCTATGAAGTTGAGACATCGCTGCTCATGCGGAGGAAGAGTGTGAACACAACAGAGTGTGTCTCGGTGCCCAGCTCAGAACATGTTGCCGAGATTGTCGGTAGACAAGgtTGCAAGATCAAGGCATTGCGAGCAAAGACCAACACCTACATCAAGACCCCAGTGCGAGGGGAGCAGCCGGTGTTCGTGGTGACAGGGCGGAAGGAGGATGTGGTCATGGCCAAGAGGGAGATCCTCTCGGCGGCTGAGCACTTCTCCCTCATCCGAGCCTCCCGGAACAAGGCAGGTTCGATGGCTGCAGCAGGGCCAGGGCTACCTGCTGCACCTTCCCTACCTGGTCAAACCACCATCCAGGTGCGTGTTCCCTACCGCGTGGTGGGACTGGTGGTTGGGCCCAAGGGGGCGACCATCAAGCGCATCCAACAGCAGACACACACTTACATTGTCACTCCTAGCCGAGACAAAGAGCCAGTGTTTGAGGTGACGGGCATGCCTGAGAATGTGGACAGAGCACGAGAGGAGATCGAGGCCCACATTGCCATACGCACAGGCAACTGTGTGGAGATTCCAGGAGACGAGAACGACTTCCACTACAACGGCACTGACGTCAGCTTCGAGGCGGGAAGCTGTGGGGTGTGGCTGCAGTCGACCGCAGCCGCACCTGCCAGTGCCCAGCGTACCAGCAACTGCGGTGTGCGCATGACCGCCAACTACCGCAACGACAGCTCCAGCTCTCTGGGCAGTGGCTCCACTGACTCCTACTATGGCGGAGGGGGGAACCGCATGGCCGACTTCAGCCCCACCAGCCCCTTcgtcaacaataacaacaatgttGGGGCCAGCTTCTGGTTTGAGGAGACTCTGCTCCCCTTGGCGTCTGAGGAGCTGGCAGCACTGGGATCTCCTGGGTTTGACCCTCTGGCCATCACCACAGCTGCTCCTGCACCGCAGCCACAGGTGGTGTGGAGCCACTTGGAACAGGGTGTCCAGCTGTTGGGTGGTCGCCAGGCCCCTGTCCGAGACAGCCATTCCGGCACACCTCACCTCTCCCCTGCCTTCCAAGAGGCCTTGGAACACCCCATGGCCCAGCGGGTTCAAAGGGTCTCCCTCAGCGTCTCAGAGTCTCAAAAGTTCCCAGTCTACGGCCCCACCTTCTCGTCCTCCAGTGACAGCTCCAGCTCTCCCCCAGACTCATGCAGAGGAGGCCAGGAATGCATCCGTTGCCTGGAGAGTGAGATCATCGCAGCCCTGGTGCCCTGCGGACACAACCTCTTCTGCATAGAATGCGCCAACCGCATCTGCCAGAGCCCCGAGGCCATCTGCCCAGTGTGTCAGGCACCAGTCACCCAGGCCATACGGCTGAGCCTGCCCTGAGCCCTGACGGGGTTGGTTGGGGGAGAGGGGCAGAGTGGGTGGTGTGTGGGTCCACGCACGTGCCTAGTATTGTCCTCCTGGTCAGACTCGCTATGTAACAATGGGATTCCCTGAAATACTATTTTATTTTGACATGTTAATACTCTTCCTAcctttgtgtttttattttaaatgtaatgTATCACATTTTTGGGGATCACTGAACTTATCCTAGGTGTTCAACTGTCTTTGAATCAAGGTTTAAGTTGGTTATAACATTTTATTTCTCTCCTGGCCTTAGTTGGGCCTTTTATTTTTCTGTTAGTCTTTTTTCTTTTTATATGAGAAAATACTTCTCCCTGTCTGTTATTAGCTGTGCTTacagacaggaagtaccaggacGTGCTACTTCAGTACTGCCATGCTTTCCATTGCAACTTGAAAACATGATCTGTTTACAGTAACTCGTGCCTAATTTCACTTAAGTAATTGAAACATACGACCGGTTTTGTGGGCACGCAGTGTTACCATAGAACTCTATAGAAAAAGCCTGTGGCCTTTTTTTAGAAAGCATGTATGTTATTGAACACTATCACTCAACCCATACCTTCCGCTTCAGGAGGTCAGACTGACGATGCATTTGGGTAGTGACCTGGTCTTCCGTTGTGGTCAACTCATGCTCCTATGTAGGTGGTTGGGTTCCTGACATTCCAGCCATATTATCCAGTATTTTTTTTACCCACATTGAACTTAACTAGCCTACACCTACCCTAGTGTGTTAAATTGGACTAACGGCCTCCTGACTGTGGTACCACCTCTTCATATGATCTGCCTTCTCACGTTTTGAGTTTTATCATGTGCCCAAGCACTGACCCCATCTCTTCTCTGCTGACAGATGATACCTAGTATTACCCCGGCTGTCATCCTCTCATCCCTGTTCCCGTCCGCTGTAGGCTGCATTACACAGGCAGCcgaattctgatattttgcccaattattggcaaagcTCTGATCTGATTGGGCTGACTGTAAATGCAGCTCGGGTGTGTTATTCTAACTTCTGGGGAATGCATTGGTCCTAAACCTCTCAACCCCAATCTTTATATTTTGTGTATGGAATATTGTTAATGACAGGTAAATAtagacatttatttttatttcacttgaagttacattatatactgtatataaatatattaaaatgtttacaaataattatttttttcctCTGTGCAGAACTGAGAGGGTGAGTTGCGGTGTACTGCAGACTGTCAGTGATATTTGCTTGTAGTATATTTCACCAGTGTTGAAAAACGATTAGCTGCCGTCTTGTAGTTGAGGGAAAGTGCACATACGCATGTTTTCATAATGTACCGCATTGTGCACTGCAAAGGCCAAGGATCAAACATGAGCTGCACCTGTACGCTACCAAATTAATGGAATACATGCTTCTTAAATATCTATGCTGTACCAACAGTTAAAGAATTTGCTAATTTTACTACACTTCTGTTATGTATATGTAGGGAAGACTAATGACATAAATTTAACAAATTGAGTCAAGTTTAAAGCAAACTATATTTTATGATAAATGGCCTTCTAAGTTGTGGCCAAAGCACTGATTTATATATTTGCTGTAAAGAGAATTAAGAGTTTTATTTTTCTGATATTACTTAATAAAGACGGTTTCATTCAAAA

Function

GO: NA

KEGG:

id description
K15686 MEX3, RKHD; RNA-binding protein MEX3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537069 lncRNA upstream 51940 10308332 ~ 10308825 (+) True G472380
TU537056 lncRNA upstream 72272 10283633 ~ 10288493 (+) True G472367
TU537013 lncRNA upstream 122065 10238268 ~ 10238700 (+) True G472336
TU537000 lncRNA upstream 135347 10225216 ~ 10225418 (+) True G472323
TU536897 lncRNA upstream 136232 10164997 ~ 10224533 (+) True G472231
TU537119 lncRNA downstream 11819 10377513 ~ 10377748 (+) True G472428
TU537177 lncRNA downstream 122258 10487952 ~ 10488157 (+) True G472483
TU537181 lncRNA downstream 125499 10491193 ~ 10491405 (+) True G472487
TU537395 lncRNA downstream 212449 10578143 ~ 10578381 (+) True G472669
TU537402 lncRNA downstream 219617 10585311 ~ 10587239 (+) False G472675
XM_036979376.1 mRNA upstream 725684 9478107 ~ 9635081 (+) False bmpr1ba
XM_036979377.1 mRNA upstream 725684 9478107 ~ 9635081 (+) False bmpr1ba
XM_036979379.1 mRNA upstream 725684 9478107 ~ 9635081 (+) False bmpr1ba
XM_036979380.1 mRNA upstream 725684 9478107 ~ 9635081 (+) False bmpr1ba
XM_036979378.1 mRNA upstream 725684 9537368 ~ 9635081 (+) True bmpr1ba
NM_001124462.1 mRNA downstream 19214 10384908 ~ 10386345 (+) True aptx
XM_021605219.2 mRNA downstream 93943 10459637 ~ 10460645 (+) True LOC110525245
XM_021605220.2 mRNA downstream 110639 10476333 ~ 10479220 (+) True mpeg1.1
XM_036979381.1 mRNA downstream 114436 10480130 ~ 10484335 (+) False prf1.5
XM_021605221.2 mRNA downstream 114442 10480136 ~ 10484335 (+) True prf1.5
TU537053 other upstream 79642 10280306 ~ 10281123 (+) True G472364
TU535218 other upstream 1086812 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 1135252 9223351 ~ 9225513 (+) True G470770
TU535014 other upstream 1549822 8809973 ~ 8810943 (+) True G470599
TU534692 other upstream 2143491 8213280 ~ 8217274 (+) False G470292
TU537828 other downstream 912644 11278338 ~ 11279265 (+) True G473070
TU539228 other downstream 1822594 12188288 ~ 12190572 (+) True G474321
TU539852 other downstream 2138066 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 2346612 12712306 ~ 12713298 (+) True G474949
TU540778 other downstream 2947985 13313679 ~ 13313969 (+) True G475692

Expression Profile