RNA id: NM_001124462.1


Basic Information

Item Value
RNA id NM_001124462.1
length 1438
RNA type mRNA
GC content 0.45
exon number 1
gene id aptx
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 10384908 ~ 10386345 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTGGCTGAAGAGAGGAAagcagttgttgttgtactaAAGAAAATCGTAATTCGTTAGGAAGAGGATCATGTCTATTTGTTTGCTGATCAGCAAAAATGGAAGGCATAAACCGATTAATCTACCTCACCTACAGACAGTTGTCTTGGGTCGGAGTCCAGAAACAACGATAAAAGACAAAAAATGTTCCAGGGAGCAAGTTGAGCTCAAGGCTGACTGCAACAAAGGGTATATCAGTGTAAAACAACTGGGTGTCAACCCCACTAGTGTGGACTCTGAGGTGGTGGGTAAAGGCAACCAAGTGGAGATGAGATCTGGCCAGCAGCTGCACATGGTCAATGAGCTGTACCCTTATACTGTGTGCTTCAAAGAGGATCCATCCAACTCTCAGTCCAGTGTGGGCACCAAGAGGCCCTGTGGGCCTGCCTCAGAGGAGCGGGAGTTTCACAGAGAGCCCCCCGGGCATAAAGTACCAAGGAAAACAGAGGACTCCACTCAGTGCAAGCATGGAGGGTCCACCTCCACTAACACACGGCCTGAATCTCAAACAACAGAGAAAACAGAAACTTTAGGATATTGGAGCCAAGGATTGAAAGCCTCAATGCAAGACCCCAAAATGCAGGTCTACAAGGATGACAGAGTAGTTGTTATCATGGACAAGTACCCCAAGGCTCACTACCACTGGCTGGTCCTGCCCTGGGAGTCCATCCCCAGTCTGAAGACACTGCACAGGGGGCACTGTGATCTGTTGAGGCACATGAATCAGGTAGCAGACAGGATTGTACAACAGCAGTGCCCCGATGCTGGCCTGTTACACTTCCGCCAGGGCTACCATGCCATCCCCAGTATGAGCCATGTCCATCTACACGTGATCAGCCAGGACTTTGACTCCCCTTGGTTAAAGAACAAGAAACACTGGAATTCATTCACAACCGACTATTTCATAGAATCTCAAGAAGTCATCCAGATGCTGGAAAAGGATGGGAAGGTCACGGTAAAACAAGGGACAAATGAGTTGTTGAAACTACCTCTCTGCTGTCACGTGTGTGGCATGGCGCTGTCCACCATACCACAACTTAAGGAGCATCTGAAATCTCACCCCTATGGTAGATTGTGAAaccatgcaacaacaaaaaataagttGGGGGTTATGATGCTCATGAGGCAAttgtagaagaaaaaaaaatgtctatGGAACCACACTGTCAATTGTATTGCTGCAAATGCTCATAATAGACATGTCTGTTCACAACCAATTGTAATTTACTTTAATACAGCTCAAAAACCTGTTTAAATAGTGTGCAGcaagtatgtttttttttgtacaaaTAAGTCTCGAGTGCGTCTGAATATAAAGCTTGGGGAACATTTGTTTATAGTTTTGTTATAGTTGCAAAAGTTTGTGACAAAAAATAAAATCTTAACTTGGCCTCAAAGTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K10863 APTX; aprataxin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537119 lncRNA upstream 7160 10377513 ~ 10377748 (+) True G472428
TU537069 lncRNA upstream 76083 10308332 ~ 10308825 (+) True G472380
TU537056 lncRNA upstream 96415 10283633 ~ 10288493 (+) True G472367
TU537013 lncRNA upstream 146208 10238268 ~ 10238700 (+) True G472336
TU537000 lncRNA upstream 159490 10225216 ~ 10225418 (+) True G472323
TU537177 lncRNA downstream 101607 10487952 ~ 10488157 (+) True G472483
TU537181 lncRNA downstream 104848 10491193 ~ 10491405 (+) True G472487
TU537395 lncRNA downstream 191798 10578143 ~ 10578381 (+) True G472669
TU537402 lncRNA downstream 198966 10585311 ~ 10587239 (+) False G472675
TU537401 lncRNA downstream 198978 10585323 ~ 10587239 (+) True G472675
XM_021605212.2 mRNA upstream 19214 10360765 ~ 10365694 (+) True LOC110525237
XM_036979376.1 mRNA upstream 749827 9478107 ~ 9635081 (+) False bmpr1ba
XM_021605219.2 mRNA downstream 73292 10459637 ~ 10460645 (+) True LOC110525245
XM_021605220.2 mRNA downstream 89988 10476333 ~ 10479220 (+) True mpeg1.1
XM_036979381.1 mRNA downstream 93785 10480130 ~ 10484335 (+) False prf1.5
XM_021605221.2 mRNA downstream 93791 10480136 ~ 10484335 (+) True prf1.5
XM_021605225.2 mRNA downstream 111413 10497758 ~ 10509049 (+) False LOC110525250
TU537053 other upstream 103785 10280306 ~ 10281123 (+) True G472364
TU535218 other upstream 1110955 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 1159395 9223351 ~ 9225513 (+) True G470770
TU535014 other upstream 1573965 8809973 ~ 8810943 (+) True G470599
TU534692 other upstream 2167634 8213280 ~ 8217274 (+) False G470292
TU537828 other downstream 891993 11278338 ~ 11279265 (+) True G473070
TU539228 other downstream 1801943 12188288 ~ 12190572 (+) True G474321
TU539852 other downstream 2117415 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 2325961 12712306 ~ 12713298 (+) True G474949
TU540778 other downstream 2927334 13313679 ~ 13313969 (+) True G475692

Expression Profile