RNA id: XM_021605225.2


Basic Information

Item Value
RNA id XM_021605225.2
length 1448
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110525250
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 10497758 ~ 10509129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggaagtggtggctggtgtgcacgcctcctgagtcatACTAGAGGTCCACTctgaatacctcttctccaccgGATACGTCTTGGGGCAGCCTCTGGCATAAGTTCAATTGTCCTCAGGATGCAATTAGGGAAAGTTGTATTTCTGGTTGTAATGCTTGTGAGTTACCGCCGCTtcgatatccaaaagttatttatGGTATTTAATTAAACAAAAaacattctgggctaataatgtaaaatATAGCACACACAAAAAcctaaatactgcaaagttgcttaggagctagaagcagagctgccatgtctgttggCACCATCTTCATTCATGTGCAAGCCAACTTTGTTCAGTTGTAGTTGAGTTTGTTCTATTGGCATGCTACCTTCATGATAAGTTCTGCATCTTAGCTAGCATGAGTATTTGTATCTTCCTGTCACACTCACATAGTCTAGTCCATTGTTTTTGCTGCCAACCTAGGCTTTCAATACACCTCCTAAACTCATGAATATTCTATGAGGGGGTGTGTACTTCAGGATATGaacaaagcaaaaaaagaaaataaaacatttcataaATTGTGTTATTTGTTTTCTTTTATTCCATGTCCAATTTTGACACAATAAATGAGAAAACAGGTCGATTTAAGGGTTTTGTTTTTAAAATGCAGAAAACGAAAACGAGTTGGTTTTTTTCGAAGTCGCCTTATTCATACACATATGGGTCACCAGGTCTCAGTTCGGGGGTGGATCACTTATCCTCACTCACAATTGCACTGCATAACCTTTCAAACTGCATTCCAACTCCGCAGGAGCAATGACATCCTACAAGCTCACCTATTTCAACATGCGAGGTAGAGCAGAGCTGCCTCGGTATATCTTTGCCTATGCTGGAATAGCCTTCGAGGATCGACGGGTAGAGTGGAGAGACTGGCCATCGATCAAGAAGAGACTTGTGGGTAACAGCAGACTAGCCGAGGCCCAGGCAGACGCTCTGGTCGACACTCTCAACGACTTCACCCTCTTAATCCCATGGAGAGAGGACAACCCACAGATCAAAACACAGAAGATTGACATGCTTTTCCAAAGCCACGCCCCCAAGTTACTGGACCATCTCCAGTGTCATTTGGGAGACAGGAAGTGGTTAGTGGGTGATTCGGAGACCTGGGCTGATCTGTACTGCCATGTGTGCTTCACTACCTTCAGTGTGCTGAGACCGGGCTTTGCTGATCACCATCCTGCCCTGTGTGGCCTGACTGACCGGGTGGAGGCCATCCCGAACATCGCTAAGTGGATCCAGTGCAGACCTACAACAGAGTTCTAAAACCTGAGCCCAGTTCAGTAGGGACCCAGAGCAGACCTACAACAGAGTTGTAAAACCTGATCCCAGTTCAGTAGGGACCCAGAGCAGACCTACAACAGAGTTGTAAAACCTGAGCCCAGTTCAGTAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537181 lncRNA upstream 6353 10491193 ~ 10491405 (+) True G472487
TU537177 lncRNA upstream 9601 10487952 ~ 10488157 (+) True G472483
TU537119 lncRNA upstream 120010 10377513 ~ 10377748 (+) True G472428
TU537069 lncRNA upstream 188933 10308332 ~ 10308825 (+) True G472380
TU537056 lncRNA upstream 209265 10283633 ~ 10288493 (+) True G472367
TU537395 lncRNA downstream 69094 10578143 ~ 10578381 (+) True G472669
TU537402 lncRNA downstream 76262 10585311 ~ 10587239 (+) False G472675
TU537401 lncRNA downstream 76274 10585323 ~ 10587239 (+) True G472675
TU537456 lncRNA downstream 145888 10654937 ~ 10658797 (+) True G472724
TU537460 lncRNA downstream 148902 10657951 ~ 10659561 (+) True G472725
XM_036979381.1 mRNA upstream 13423 10480130 ~ 10484335 (+) False prf1.5
XM_021605221.2 mRNA upstream 13423 10480136 ~ 10484335 (+) True prf1.5
XM_021605220.2 mRNA upstream 18538 10476333 ~ 10479220 (+) True mpeg1.1
XM_021605219.2 mRNA upstream 37113 10459637 ~ 10460645 (+) True LOC110525245
NM_001124462.1 mRNA upstream 111413 10384908 ~ 10386345 (+) True aptx
XM_021605243.2 mRNA downstream 1029228 11538277 ~ 11561607 (+) True LOC110525261
NM_001160539.1 mRNA downstream 1053418 11562467 ~ 11604688 (+) True commd10
LOC118965115 mRNA downstream 1235620 11744669 ~ 11744803 (+) True LOC118965115
XM_036979409.1 mRNA downstream 1236964 11746013 ~ 11789305 (+) False LOC110525262
XM_036979408.1 mRNA downstream 1236969 11746018 ~ 11809089 (+) False LOC110525262
TU537053 other upstream 216635 10280306 ~ 10281123 (+) True G472364
TU535218 other upstream 1223805 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 1272245 9223351 ~ 9225513 (+) True G470770
TU535014 other upstream 1686815 8809973 ~ 8810943 (+) True G470599
TU534692 other upstream 2280484 8213280 ~ 8217274 (+) False G470292
TU537828 other downstream 769289 11278338 ~ 11279265 (+) True G473070
TU539228 other downstream 1679239 12188288 ~ 12190572 (+) True G474321
TU539852 other downstream 1994711 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 2203257 12712306 ~ 12713298 (+) True G474949
TU540778 other downstream 2804630 13313679 ~ 13313969 (+) True G475692

Expression Profile