RNA id: XM_021605248.2


Basic Information

Item Value
RNA id XM_021605248.2
length 3027
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110525265
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11824359 ~ 11837872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTATTATCACTTGTCATTTATTCAGCAAAGTAACTGCAGTTTATGAATATATTATGCCTGTCGTATGTAACCTATAGaatatacatgtattttttaGAGACAATCGGTTCAATGGGGATGTCTGGCGCAGCCTATGGACCATTATGATTAGAATATTGGACTTGGATTGGATTGATGTGTACTATGTACCATGTTCCTTTTCATTCTCTTATTATTTCAGTCTGATTAAAATGACGGACCGAATATCTGACTAGGCATCTTGCCACAAGGAAATGTGACATATCAGCATTTGTATTTTTGACAGAAATGTTAAAAGGTAACGGCGGAATGATCACGAGCGACTGTCTAGAAACACCTCTTCAGCAACATTATTTTATTAAACATTTTTATGATAATATTGTTTTTGCTATGCTCTATTGCGCATGCGTGCTGGCCGGGACGCTGTCACCACGCTTCGCTACATTATTGCGTGATTTAGCCTGTATGGGAGGAAAGTGAAGAAAACAGAACATTAAAATGCATAGGCAAAGTGGTCTGACGGCAGCGGAAGGATTTACTTGTAATCCTTAAAAATACGTTGTGCCAACGAAGAATGTCAGGGACATCAAATGTAGAATCTGCTGAAGGAGTAGTCTCCAAAGTTAAAGTCAAAAAGCAGATCAAGACTATCGTGAAGGATTTGGAGACCATACTGGGAGACTTGAGGGATGTAGCCAAGGAACTCAAAGAGGTTGTGCATGAGATCGACTCCCTCACGTGTGACCTAcagctggaggaggagatgaCAGACAGTTCAAAGACAGACACCCTGAACAGCAGCTCtagcagcaccaccaccaccaccacagcctcCAGCATCGACAAGATCAAGATCGCCATCTTTAGGCCCCCGTCTGTCAGCCACGCCATCCTGACCGTGATGAAGAAGCCCCACCCTCCGCTGCCCCCTCCCAGGCTGACACCTATCAAAGCAGAGGAGCACAACAAGAACCCACTATCAGGGAGCCTACTAGCCAAGGCTAACGGGACTCTTATGcgtaatggtgttttcccagggaAGCCAAACAGAGACTTATCGTGTTGCATCTCTAATAGtacaaaggaagagagaggacttATGCCTATGCCTTTGCTACGGCATGAAAAGACCAAATGCCCCCAGGCAACCCGGGAGAGGGTCCGATTCAGTGAAAAGGTCCAGTATCACGGGTACTGCCCTGACTGTGACCTGCAATATGACGTTGACAACACAGATATGCACTTACAGACAGAATTTACTGATGACATGAGCCCTGTCCATCAgtgttcctcctcctcaccaccatCCCAGCTCATGTTAGAAAATGGCGGTCTAAGTGTCAGCCATAGTTTCCCTCCTACAAAACTGCCTTGTGTGCCTCATTCTAACCCTTCCCTGAAACCACAGAAAACCATCCTTCGAAAATCAACCACCACAACGGTTTGATGTTAATCACCCTTAAtttaaatatttctaaataatTTATAGTGTTTTCTATTTCATGAGCACTTTCTACTCCAGTCAAACGTGGATTATCTAAACGATGAGGAAAAAAGAGCGCTAGAAGACGTGGCCATGAGCTCAGAAATGCACAAGGAGAGAATGAACGGTCCTTCTGGGTAAAAGTCGAAACAGCCTTTACTGACATGAAACGGATCAATTTTGGTTCATCATACAGTCACTGAGAACGAGGCTCCCTACCTTTGACAGAACACCAATTCCTCTGAGCCAAGGCCAAATAATTAATCCTCATAGAGAATTGGAAGACATAGTAGCACAGTTTTATTCATGGGAGAAGCATGGTAAAAGTTAAAAATGTAATGCAAACATAAGATGAAAACATTGCATCCAAATGTGACTGGTTCATTTACAATTGAAATGGAGATTCTATGTATAATTTATAGGCAGTGGAATTACTGATGTCCCCAGCATTCTGAGAACTCTTCAAGGGTGGGAAGTCTGCTTATAGCAGACATTCCTATTGaacgtgagaaagagagaaacataaCCATGGTCATGTTACTTTCTTATGACATCATTTGAACAAGAACAGACACACTCAGTTCATAATTGTATGTGTTGGTTACAGGTTCTTGTGAATTGTGGGGTATTAGACATAAACAGCCAGTAAAATCTGCTGGACAAGATTTGTTGATCTGCAGTGACTGCTCTTAATATACAGGAACATGAAATACATACATGTGTCATATTGAAAATCCAACATACAATATGAGGCAAGTTAAAAGGCTAAAATATAGGAATTGAGGATGTTCACTAATTTGTGTTCGGAATGCTATGTTGAGCGTATAGAAATCTATGTGTGATCAATGTCATACAAGTTGCTTGCAAAGATATGGCATGCACTTAAAGCAAGAATAACTTgcattacattttatttgtatatatttatatatttataaaacCTTTCTACAGAGATTGTAACATTTAAAAAGaggatattttttttattccGTGGGATGAAAGGCGTGTTTTAAAGAAGGCTGTCATTCTTCTGACAGTACATGCGTTTCTGCAGGGCATATCTggataatttatttatatagtgagagagtatatatatatatatatatatatatatatatatataaaaacacattATTGTTATGGTATAGGGGCGGAAAAAATTGTGTAAAATGTGAAAGCAAACTAGATTAAACCAAATACATTGTTGTGCTTATCAGAGGAGGAATGATACTGAATGAATGCATGACTGATTCTTTTTCCACTTCCTCCTGTCATCGCTGTGGTCTGCTATGCATTTCCTGGAGCGGCTGTTAGGATCCAACAACTGGAGTGCACCTCACTTCGGCCCACCCATAGTCGATGCGGACTTTGTGACTGTGTTCTctcgtaaaaaaaacaaacattgtcaACGACGTGTCGGGGAAACAATGTCCACATCTTTGGACATCATTTGCACTTTGCACTTATGTTAGTCTTTATACTTTGTTTTTCCTTTAACATGTTAATTACAAAATAACTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU538910 lncRNA upstream 23967 11799914 ~ 11800392 (+) True G474038
TU538702 lncRNA upstream 130036 11694060 ~ 11694323 (+) True G473858
TU538660 lncRNA upstream 178213 11645891 ~ 11646146 (+) True G473819
TU538647 lncRNA upstream 201006 11623116 ~ 11623353 (+) True G473806
TU538642 lncRNA upstream 206117 11617512 ~ 11618242 (+) True G473801
TU539022 lncRNA downstream 3902 11841774 ~ 11842085 (+) True G474142
TU539023 lncRNA downstream 5037 11842909 ~ 11843237 (+) True G474143
TU539066 lncRNA downstream 42718 11880590 ~ 11880841 (+) True G474185
TU539070 lncRNA downstream 46362 11884234 ~ 11884593 (+) True G474189
TU539074 lncRNA downstream 54292 11892164 ~ 11892377 (+) True G474193
XM_036979404.1 mRNA upstream 15270 11746019 ~ 11809089 (+) False LOC110525262
XM_021605250.2 mRNA downstream 16024 11853896 ~ 11857562 (+) False pheta1
XM_021605251.2 mRNA downstream 16028 11853900 ~ 11857562 (+) False pheta1
XM_036979410.1 mRNA downstream 16195 11854067 ~ 11857562 (+) True pheta1
XM_036979411.1 mRNA downstream 51065 11888937 ~ 11950017 (+) False sh2b3
XM_036979412.1 mRNA downstream 51065 11888937 ~ 11950017 (+) False sh2b3
TU537828 other upstream 545094 11278338 ~ 11279265 (+) True G473070
TU537053 other upstream 1543236 10280306 ~ 10281123 (+) True G472364
TU535218 other upstream 2550406 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 2598846 9223351 ~ 9225513 (+) True G470770
TU535014 other upstream 3013416 8809973 ~ 8810943 (+) True G470599
TU539228 other downstream 350416 12188288 ~ 12190572 (+) True G474321
TU539852 other downstream 665888 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 874434 12712306 ~ 12713298 (+) True G474949
TU540778 other downstream 1475807 13313679 ~ 13313969 (+) True G475692
TU541379 other downstream 2146968 13984840 ~ 13985259 (+) True G476234

Expression Profile