RNA id: XM_036979410.1


Basic Information

Item Value
RNA id XM_036979410.1
length 2465
RNA type mRNA
GC content 0.46
exon number 3
gene id pheta1
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11853896 ~ 11857562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTTGTGGAAATGGGACAATTCTCCAGCGGAGAGAAAGGGGATGGTGAATTCTGACCTGCGATGCTGTTGTGAGATCAAACAGGCCTGCGGTAAAGGGTTCACCAACTGGATATGAGAGCGATCTAACACCCCTGTGGAGAAGGTGTGATGAAGCTAAATGAACGTAGTGTGGCTCACTATGCCACCTGCGACTCGCCGCCAGACAAGACAGGCTTCCTCTTCAAGAAGGGGGAGCGAAACACAGCCTACCACCGGCGTTGGTTGATCCTGAAGGGCAACATGCTGTTCTACTTTGAGGAGCGTGAGAGCCGGGAACCCATCGGCGTCATCGTGTTGGAGGGCTGCACCGTAGAGCTCTGCGAGTCAGCTGAGGAGTTCGCCTTTGCCATCAAGTTTGACTGCGCCAAGGCGCGTGTCTACAAGATGGCGGCGGAGAACCAGGCGGCCATGGAGTCGTGGGTTAAGGCTCTGTCGCGAGCCAGCTTCGACTACATGCGGCTGGTGGTGCGGGAGTTGGAGAGGCAGCTGGAAGAAATCCAGGAGGGGGCTGCTGGGCTGCAGGGCAGGCCCAAGTCCTCCAAGAAGGCTGGGGGGGTGGCACGCTCCAAATCAGGAGCATCATTCAGCGCTTCGCATGTGCCCTCTACCCAGGTTACAGGTGCAGCGCTCGCACAGGGTTCGGCTCATGCTCGCAGCCTTCAGGAGGAGGTGCAGCTCCCGTCAGGCACCTCTAAAGAGAACGGGGTGGCCTGGAGCAAGCCTTCTGCTCTGGTCAATGGGTTTGGTGAGGGCCCCCACTCTGGTGTGCCGTGGGAGGGAAATGGGAATGGAGGGGGCGATGGGTTCAGGCCTCCGCCCGTTCCTCCGCGCAGGAGGGGTGCATCTCTTGAGAGTCCTGTCTCCCCCGGGACTGGGTGCTTCTCCAAACTTCACGACTGGTACGGAAAAGAGGTGGCTGAACTGAGGGTGGAGTGGCTTCAGAGCCATTGAGGcgcccctccccctcacctcacAGCCCAACTGTTAGCCATTATTAGAAAGGGCACTTGTCACTTCGCAGTATTGTTTCACCCCAAAATACCTTGATTTTAATGCCAGAGAGCGTGTCCTTAAAATTCCAAACCCTTGGGGCAGTCTGTGGAGCTGGTTGATTTTCTAAAAGCAGCACTTTCCTGGTATTTTTAGGTCTTGTGGGCCAGTGGGAATATGATGTGTTGTCCTGTGACTGTCTGTCACTACATTTCTATGAGTCTATGGTACATTttggatgttttttttaaaggaaaatcTTTGTATTTACTGTCTATTTTGTTGTAGTTTTTTTCCAATCAGAAACTACGATCACTTATCACTTTCTCTGTCATTGTTGTGTTCTACCATTGTTATATTCACAAAAGAAAGGATGACCCCTGATTGTTACTGAATTGAGTGTCTGACACATAATAGAAATCAGTACATATACATAGTTGAGAAAATGCATTTCATTCCATTTCACCGGAGGTTTTGAAAGGGGGACCATTGAAGAATGAACACCGGCGCATTCATTTTTTATACCACATTAATTTTGCTCAAGCAATGGTTTACATATTTAGAaaattcttctctctctctttttaacctGTGCCTTATGATTTTCCTCCCAAACCTGTCGTTGACAGTCATCTAATAATAAGTGTAGGCCTACCCAATGCTTTTATCTGCCTTTCGTTTTTGCCAAACCACACTTTTAGTGCAATTTTTGTTCGTTTGCGACAATGGCTCAATTTGGCCAGATCTAACGCACAGTATTTTCAGTAGtcactttttttatatatacatttaccgATAATGGCATAAcccagttttatattttttaggGGGGCCTTTTCTGTTTCCTGGTCATACCATACTAGACTGGTAGATTTAGACAAGTCTGTTACTTGTGCCAAAAATATGGTAGGACGAGGAATGGAAAATCAAGTTGTGGAAAGCCAGTAAAGATCCTGAACAGGCTACAGGTGGTTGGTATAGATGTGATTGTGACTGAGTGAATGATCAGTTGTATGTTATTAATtactatgttttttaaaaatctgacactaGGAGGACATTttgtactgagttacagttccctTTTTTAattatatgacatttggagtatGTCAAATTATTGGATGAGACATTGCACAGCATGACACCTCTATATCCAGTGTGCTAAAAATGGAACGATGACAACCCAATGCTTCTTTATACTTTTGTAATCTGTTTGTGGTCAACTTCATGGAAAGAACACCAAAATATTTTAGTACACTACTGCCAGAAGAATGTCCTGTTTCCATGTGGCAAGATGGGATTGTGTCTAGAGACAGTAATGCAATTACCTTCAGCTGCTCACccctgaatgaatgaatgactgaaCTTATAATACTATGAGCATTACCTATAAGTAATTTAAACAAATCAATAAACAGCTGAAAGATTCTC

Function

GO: NA

KEGG:

id description
K23791 PHETA; sesquipedalian

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU539023 lncRNA upstream 10830 11842909 ~ 11843237 (+) True G474143
TU539022 lncRNA upstream 11982 11841774 ~ 11842085 (+) True G474142
TU538910 lncRNA upstream 53675 11799914 ~ 11800392 (+) True G474038
TU538702 lncRNA upstream 159744 11694060 ~ 11694323 (+) True G473858
TU538660 lncRNA upstream 207921 11645891 ~ 11646146 (+) True G473819
TU539066 lncRNA downstream 23028 11880590 ~ 11880841 (+) True G474185
TU539070 lncRNA downstream 26672 11884234 ~ 11884593 (+) True G474189
TU539074 lncRNA downstream 34602 11892164 ~ 11892377 (+) True G474193
TU539038 lncRNA downstream 91561 11949123 ~ 11949351 (+) True sh2b3
TU539046 lncRNA downstream 92519 11950081 ~ 11950396 (+) True G474165
XM_021605247.2 mRNA upstream 16195 11824359 ~ 11837872 (+) False LOC110525265
XM_021605248.2 mRNA upstream 16195 11824359 ~ 11837872 (+) True LOC110525265
XM_036979406.1 mRNA upstream 44978 11746019 ~ 11809089 (+) False LOC110525262
XM_036979411.1 mRNA downstream 31375 11888937 ~ 11950017 (+) False sh2b3
XM_036979412.1 mRNA downstream 31375 11888937 ~ 11950017 (+) False sh2b3
XM_036979413.1 mRNA downstream 31400 11888962 ~ 11950017 (+) False sh2b3
XM_021605262.2 mRNA downstream 130800 11988362 ~ 12010019 (+) False LOC110525268
XM_021605263.2 mRNA downstream 130801 11988363 ~ 12010019 (+) False LOC110525268
TU537828 other upstream 574802 11278338 ~ 11279265 (+) True G473070
TU537053 other upstream 1572944 10280306 ~ 10281123 (+) True G472364
TU535218 other upstream 2580114 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 2628554 9223351 ~ 9225513 (+) True G470770
TU535014 other upstream 3043124 8809973 ~ 8810943 (+) True G470599
TU539228 other downstream 330726 12188288 ~ 12190572 (+) True G474321
TU539852 other downstream 646198 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 854744 12712306 ~ 12713298 (+) True G474949
TU540778 other downstream 1456117 13313679 ~ 13313969 (+) True G475692
TU541379 other downstream 2127278 13984840 ~ 13985259 (+) True G476234

Expression Profile