RNA id: XM_021605296.2


Basic Information

Item Value
RNA id XM_021605296.2
length 2230
RNA type mRNA
GC content 0.50
exon number 8
gene id arsk
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12888485 ~ 12895776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAGTACGGCAATGGCGACACCACGTGACTAATGCGGAACAACAACAAACGTAAAAATTGAATTTGTTGCAGTCAAGAAGCCCTTGTTGGACGACAGTCACTTCCCTGAATAAATGCCTCTCGTCAGCACCAAGTCAAGCAGCAGCAGTTAATGTCGTAATAATTATAATTTTTTATATTGATGTACGCGATGTATGGAACATGGTTAGTTCTCCTTATACTTTCCCAAACGCATGGACATTGTATGTGCCAAAATCATACCACAAACTTCAGACCCAACATTGTGATGGTGATGTCCGATGCATTTGATGGGCGGCTGACCTTTGACCCTGGGAGTAGGGTGGTCCAGTTACCATACTTAAACTATCTCCGGGAGCTAGGCACTGTCTTCATCAATGCCTACACCAATTCTCCAATCTGTTGCCCCTCAAGAGCAGCTATGTGGAGTGGTCGCTTTGTCCATTTAACTGAGTCCTGGAATAATTATAAGTGCCTGGACCCCAATGCCACAACGTGGATGGACATGCTCCAACAGAATGGCTATAACACCTTGAGTGTTGGGAAGCTGGACTATACTTCAGGAAGTCACTCTGTCAGTAATCGTGTGGAGGCATGGACGCGAGATGTGCCTTTCCTTCTGCGGCAAGAGGGCCGGCCGGTGACAGACCTGGTTGGGGACGCGTCCACAACGAGAGTCATGACCAAGGACTGGAGAACCACGGACATTGCCACCCAGTGGATCCGCCACAAAGCTGCAGCTCTCTCCCAGCCTTTCGCCCTCTACCTGGGCCTGAACCTGCCACACCCCTATGTCACAGACTCCTTGGGGCCCAATGCTGGGGGGTCCACCTTCCGCACCTCTCCTTACTGGCTCGAAAAGGTGATGCCTGAATTCATCTCTATTCCAAAATGGCTGCCGTTGTCCGACATGCACCCTGTGGACTACTACTCCACCTTCACCAAGAACTGCAGTGGGAACTTCACAGAGCAGGAGGTCAGAAAGATACGGGCCTTCTACTACGCTATGTGTGCCGAAACAGATGCCATGCTGGGCCAGGTGATCTCAGCTTTGCGAGACACAGACTTGCTGGACACCACAGTGCTGCTCTTCACGTCTGACCACGGCGACCTGGCCATGGAGCACCGACAGTTCTACAAGATGTCCATGTTTGAGGGCAGCTCCCATGTCCCCCTGCTCATCATGGGGCCTGGGGTGAAGTCTGGCCTGCGGCTGAGTCAGCCAGTGTCCTTGGTGGACATCTATCCCACTGTGCTGGAGATGGCAGGCGTAGCAGTGCCAGGTGGCCTTAGTGGTCATTCACTCCTGCCTTTGCTGTCTCAGTCTGCTGCCCGGCCCGCACGGCCTCGCCCAGACTGGGTATTGAGTGAATACCACGGTTGCAATGCCAATGCCTCCACCTATATGTTGAGGGAGGGCCAGTGGAAGTACATTACCTACGCAGATGGTGTGAGTGTCCCCCCGCAGCTAttcgACCTAACGGTGGACAAAGAGGAGCTTCACAATGTGGCGTCCAAATTCCCTGATGTGTGTCGTCACCTGGACAAGCTGCTGCGCAGCGTAGTAGACTACCCCCAAGTCTCTCAGGCAATCTGTCTCTACAATAAGCAACAGTTTGCTGCATGGCGAAAGAGTCTTGGTGACAATTATACCCAAGTCATTGCAAACCTGCGTTGGCATCTGGACTGGCAAGAGGATGTGGAGAACAATGAGAAAGCCATCGATGAGTGGCTCATGACATCTGGGTTCTCTTCTGAAAAGCTCAAAGTATCTATGTTTTAACTGGCCTGCtgtattagaaaagcacaaaaaTAAAGATGTCATGCCAAACACGACTACCAATAACTGCACAATCCACAACTGGTGCTGCAAACTGAAATGATAATTCTGGTCAAAATGTGAGAACACACACCCCTGTAGTTAAAGGGTAATTATAATTCACTTGTTTCTTTGTTTATTTACTCTAGTAAGATTGTGGGCGGCAGGTATAGTAGTGTTAGGCTAggaaccgaaaggtcgctggtttgaatacccgaggTGACGTGGTTACAAATCTTAAGATATGCCCTTAAGCAAGATACTAAACTTATGTCAGTGCTCCAGTGGCACGATACTACTACggatgaccctgtaaaacaatccatttcactgcacctatccggggAGTATGTGACAATGaaacataaaataaatatattgtatGTCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU540029 lncRNA upstream 69082 12819096 ~ 12819405 (+) True G475009
TU540013 lncRNA upstream 93045 12789576 ~ 12795442 (+) True G474995
TU539956 lncRNA upstream 111983 12706365 ~ 12776504 (+) True G474945
TU540075 lncRNA downstream 22031 12917807 ~ 12920286 (+) True G475049
TU540611 lncRNA downstream 268949 13164725 ~ 13165043 (+) True G475526
TU540655 lncRNA downstream 316907 13212683 ~ 13213251 (+) True G475570
TU540675 lncRNA downstream 325301 13221077 ~ 13221375 (+) True G475590
TU540689 lncRNA downstream 337281 13233057 ~ 13233266 (+) True G475604
XM_021605299.2 mRNA upstream 151 12882604 ~ 12888336 (+) True LOC110525291
XM_021605291.2 mRNA upstream 171119 12715893 ~ 12717368 (+) False hspb11
XM_021605292.2 mRNA upstream 171119 12715893 ~ 12717368 (+) True hspb11
XM_036979166.1 mRNA upstream 302004 12583971 ~ 12586483 (+) True LOC110525282
XM_021605280.2 mRNA upstream 323689 12560369 ~ 12564798 (+) True LOC110525280
XM_036979430.1 mRNA downstream 1175 12896951 ~ 12925948 (+) True nol6
XM_021605302.2 mRNA downstream 44994 12940770 ~ 12954059 (+) True aqp3a
XR_005052402.1 mRNA downstream 426266 13322042 ~ 13324795 (+) True LOC118965067
XM_021605308.2 mRNA downstream 830933 13726709 ~ 13732626 (+) False LOC110525299
XM_021605307.2 mRNA downstream 830933 13726709 ~ 13733060 (+) True LOC110525299
TU539960 other upstream 175189 12712306 ~ 12713298 (+) True G474949
TU539852 other upstream 384368 12503760 ~ 12504119 (+) True G474851
TU539228 other upstream 697915 12188288 ~ 12190572 (+) True G474321
TU537828 other upstream 1609222 11278338 ~ 11279265 (+) True G473070
TU537053 other upstream 2607364 10280306 ~ 10281123 (+) True G472364
TU540778 other downstream 417903 13313679 ~ 13313969 (+) True G475692
TU541379 other downstream 1089064 13984840 ~ 13985259 (+) True G476234
TU541393 other downstream 1101308 13997084 ~ 14015564 (+) True G476248
TU544659 other downstream 3463640 16359416 ~ 16359751 (+) True G479239
TU545301 other downstream 4083406 16979182 ~ 16982220 (+) True traf1

Expression Profile