RNA id: XM_021605302.2


Basic Information

Item Value
RNA id XM_021605302.2
length 2731
RNA type mRNA
GC content 0.49
exon number 6
gene id aqp3a
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12940770 ~ 12954059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAGGCCAGGGCCTcatccatcacacacactcaggaggacctacctacctacctacctactgtcaccAGACACAGTACAGGAGGCCAGAGCATCAGCCATCACACACATTCAGgaagacctacctacctactgtcaccAGACACAGTACAGGAGGCCAGGTCATCAGCCATCACACACACTCAGGAGGACCTACCTTGCCGAGCAGCACTGAACCATGGGAAAACAGAAGATATGGTTGGACAAGCTGGCACGGAACTTCCAGATCCGTAACCTGCTGCTGCGCCAGGCTCTGGCAGAGTGTCTGGGTACCCTCATCCTGGTGATGTTTGGTTGTGGTGCGGTGGCTCAGCTGGTGCTTAGTGGAGGATCTCATGGCATGTTCCTCACCGTGAACTTTGCTTTCGGCTTCGCTGCCACCCTAGGGATCCTGGTCTGTGGCCAAGTATCAGGAGGCCATCTAAACCCGGCGGTGACCTTCGCCCTCTGCCTGCTTGGGAGAGAACGCTGGAGAAAGTTCCCAATGTACTTTGCCTTCCAGACACTGGGCGCTTTCCTGGGCTCCGGGATCATCTTTGGCCTGTACTTTGACGCTCTGTGGGGCTTTGCTGGAAAGCTCATCGTTACCGGGCCCAACGCCACTGCTGGCATCTTCGCCACCTACCCTGGCGAACATCTCAACCTGCTCAATGGCTTCTTTGACCAGGTGATTGGCACGGCGGCGTTGGTCGTGTGTATCCTGGCTATCGTAGACCCCTACAACAACCCCATCCCCCAGGGCCTGGAGGCCTTCACGGTGGGCTTCGTGGTGCTGGTCATTGGCCTGTCCATGGGCTTCAACTCCGGCTACGCCGTCAATCCTGCCAGGGACCTGGGGCCTCGTCTCTTCACCTCCCTGGCAGGCTGGGGCACCGAGGTCTTCACTGCCGGTAAGTGCTGGTTCCTGGTGCCCATCTTTGCCCCGTTTATAGGCTCCACCTTTGGGGTGATAGTCTATCAGCTGATGGTGGGCTACCATCAAGAGGGAGAGGCTCGCGacaagaagaggagggaggatgaggagaaagaggaagTCAGAGTCAGACTCACTAATATCACCAAAAAGGATGCCCTAAAGGAAGAGATGGTATGAGTCTCTTAACCTACCACTCTCCAGCAGCCTTCACtccccaccactaccaccactactactaccactactactaccaccaccaccaccactactaccaccaccactactatcaccacaaccaccaccatcaccacaaccaccaccactactaccatcaccaccaccaccgacACCaacactactaccatcaccaccaccactactacctaccaccatcaccaccaccaccaccaccaccaccaccaccaccactactaccatcaccaccactactactaccaccatcaccaccactactaccaccatcaccaccaccaccactaccaaccccACCACTACAAGCATCCTGTACCCCTAAAGCGAGTCCCAGTGGGGGGTACCGTCTCCTGGAGGGCCGGTGGGTCCCTCACCATCCTTGACTCTGACAGCTGTGTGTCTGTAAGGAGACAAATacagcacacacatgcacaatggACCACAGTCTTTTCCATAGCATCAGCATCGCTCCAGTATATTTAGCTCTAGGCTTCCTTTGTCTTACATTGCAGCTTAATCGTGTCCTTAAGTAAAAGGGTGAATGTCATGACTCAAACAGAATTATATTAATTCTAAACGTTTAGAAACAATGGAAGTTTATATCCTAATATCTTTAGGGCTACTGTTTGAAATGTTTGCTCTGTTTTATACTGATTGTATGTGtctcagaggaggctggtgggaggagctataggaggatggcctattgtaatggctggaatggaattaatggaacgatatccaacacatcaaacatatgaaaACTACATGTAGTTGACTCCCTTCCatcaattccattccagccattacaatgagcccgttcgtctattgctcctcccaccagcctcctctgatgtgCCACGACCAGAGTACTGGAATTTCTAAAATGTCAATGTCAACATTCCTCTCACAAGGAAATGCCTGCTTTTTCTTGTTACGGAAATTGAAGGAATACCTTCAAACAGTGAACATAGGTTGAATTTAAGCAGATGTTTTCCTGGTTAGAGGAAAGAGAACACCTCTCTATGGGATAGGTAGTGTGATAATGACTTTTGATTAATGCTTGTTATGTCATTACATGTAATACAGACTGTATACTGTCTATCTGTTGGCAAGGTAACAAGACTACAACCAGAAAACAGTCCGTTCTGTATATCTTATTGTTCAGAGAGTTAACAACTAGCTAGCTGTGAAGTGTTCAAGCAGTATACTTTGATTGTTTCATGGCAACACAGCCTTCTGACCTCTCATTGGAGTGATGAAAACCACCGTTCTTCTTTCCTTCATCAGCTCTTGGGTTTCTCACCATATAAAAACATTTGAGATTCATTGATTTGATTCATTTTCATTGGGTTTGATTGCCAACACTTTTTGCTTGTAAATATTTGCAGTATTTAAACCTGTCAATAAAACCACTGCCATATGTGCCTTGTGTCAGTAACACGTTGCTAGGGTTCTAATGACTGTGCCCTAAGGCCTTTGGTATATTGTTAGTTGGGTCAGGAGTATTTTTTTGTACTATCATTATAATAAAGTTATGTTATGGTTTAAATATGGTTCATGA

Function

GO: NA

KEGG:

id description
K09876 AQP3; aquaporin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU540075 lncRNA upstream 20484 12917807 ~ 12920286 (+) True G475049
TU540029 lncRNA upstream 121365 12819096 ~ 12819405 (+) True G475009
TU540013 lncRNA upstream 145328 12789576 ~ 12795442 (+) True G474995
TU539956 lncRNA upstream 164266 12706365 ~ 12776504 (+) True G474945
TU540611 lncRNA downstream 210666 13164725 ~ 13165043 (+) True G475526
TU540655 lncRNA downstream 258624 13212683 ~ 13213251 (+) True G475570
TU540675 lncRNA downstream 267018 13221077 ~ 13221375 (+) True G475590
TU540689 lncRNA downstream 278998 13233057 ~ 13233266 (+) True G475604
TU540696 lncRNA downstream 284471 13238530 ~ 13238803 (+) True G475611
XM_036979430.1 mRNA upstream 14822 12896951 ~ 12925948 (+) True nol6
XM_021605296.2 mRNA upstream 44994 12888487 ~ 12895776 (+) False arsk
XM_021605297.2 mRNA upstream 45374 12888485 ~ 12895396 (+) False arsk
XM_036979428.1 mRNA upstream 45374 12889361 ~ 12895396 (+) True arsk
XM_021605299.2 mRNA upstream 52434 12882604 ~ 12888336 (+) True LOC110525291
XR_005052402.1 mRNA downstream 367983 13322042 ~ 13324795 (+) True LOC118965067
XM_021605308.2 mRNA downstream 772650 13726709 ~ 13732626 (+) False LOC110525299
XM_021605307.2 mRNA downstream 772650 13726709 ~ 13733060 (+) True LOC110525299
XM_021605312.2 mRNA downstream 1687673 14641732 ~ 14644594 (+) True gig2p
XM_021605316.2 mRNA downstream 1737505 14691564 ~ 14706855 (+) False LOC110525306
TU539960 other upstream 227472 12712306 ~ 12713298 (+) True G474949
TU539852 other upstream 436651 12503760 ~ 12504119 (+) True G474851
TU539228 other upstream 750198 12188288 ~ 12190572 (+) True G474321
TU537828 other upstream 1661505 11278338 ~ 11279265 (+) True G473070
TU537053 other upstream 2659647 10280306 ~ 10281123 (+) True G472364
TU540778 other downstream 359620 13313679 ~ 13313969 (+) True G475692
TU541379 other downstream 1030781 13984840 ~ 13985259 (+) True G476234
TU541393 other downstream 1043025 13997084 ~ 14015564 (+) True G476248
TU544659 other downstream 3405357 16359416 ~ 16359751 (+) True G479239
TU545301 other downstream 4025123 16979182 ~ 16982220 (+) True traf1

Expression Profile